PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00082317001
Common NameGSBRNA2T00082317001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family B3
Protein Properties Length: 513aa    MW: 58643.3 Da    PI: 9.935
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00082317001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B344.13.8e-14693197
                         EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
                   B3  1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89
                         ffk l     + s+ l++p  f+ ++  g  ++e+ t +l++  s  +W+vk+  + ++    lt+GWkeF+ a++L+ gD+++F+ ++++ 
  GSBRNA2T00082317001  6 FFKPL--LPGFHSH-LTIPVAFFLKYieG--TNEHHTAKLRSdASMITWQVKI--EDGK---KLTEGWKEFALAHDLRIGDILIFRQEKDMA 87
                         66666..5667777.***********743..346668999986888*******..4443...39**********************777677 PP

                         E..EEEEE CS
                   B3 90 felvvkvf 97
                         f  +v+++
  GSBRNA2T00082317001 88 F--HVTLL 93
                         7..77665 PP
2B368.31.1e-21136230298
                          EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
                   B3   2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                          fk+ + +++l+ + l lpk+f++++g+++ ++ +++l++e+gr W++ l  +k sg++++++GW++F+ an+Lk+g + +Fkl++ s+++
  GSBRNA2T00082317001 136 FKTNIWPSSLRYDTLNLPKSFVRANGLETSCGGEIVLMNEKGRPWTLVL-KQKLSGTTYIRRGWRRFCIANRLKTGGVYTFKLIQ-SGRT 223
                          6888889999***************************************.5788888***************************9.7887 PP

                          .EEEEE- CS
                   B3  92 lvvkvfr 98 
                          +v+ + +
  GSBRNA2T00082317001 224 PVLLLSS 230
                          8887766 PP
3B365.11.1e-20265353797
                          .-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
                   B3   7 psdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                          +  +l+ + l lp kf +e+g++ +++ +++l++e+gr+W+++l+ +++ g++++t+GW++F +angL++g + +Fkl++ ++++l +++
  GSBRNA2T00082317001 265 SRATLRYDTLGLPMKFSRENGLEARCG-EIVLMNEKGRTWKLNLKRKRSCGTMYITQGWRSFRSANGLRAGSSSTFKLIK-RGGTLALRL 352
                          556778899************998887.****************98999999**************************99.555566665 PP

                          E CS
                   B3  97 f 97 
                           
  GSBRNA2T00082317001 353 S 353
                          5 PP
4B350.15e-16414506699
                          ..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
                   B3   6 tpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                          +++ +l++  l lp +f++ hg+++e  ++++l d++g  W+  l+  + + +++ l +GW+eF kan +k+g+++++kl+++ ++++v+
  GSBRNA2T00082317001 414 LRPFNLEKYSLFLPLRFTRWHGINEE--TKMRLLDKKGVMWSTDLRAgKINNDKIRLVGGWQEFFKANCVKTGESIMLKLIWEGDKRCVL 501
                          55666777889**********99954..58***************88777777799***************************9999*** PP

                          EEE-S CS
                   B3  95 kvfrk 99 
                          k+++k
  GSBRNA2T00082317001 502 KFCSK 506
                          **987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086311.801396IPR003340B3 DNA binding domain
SuperFamilySSF1019366.47E-185103IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.4E-216109IPR015300DNA-binding pseudobarrel domain
SMARTSM010191.1E-21696IPR003340B3 DNA binding domain
CDDcd100174.75E-14693No hitNo description
PfamPF023621.6E-91489IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.5E-20127230IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.26E-20130229IPR015300DNA-binding pseudobarrel domain
CDDcd100171.78E-15133225No hitNo description
PROSITE profilePS5086315.129135231IPR003340B3 DNA binding domain
PfamPF023623.2E-20136230IPR003340B3 DNA binding domain
SMARTSM010197.5E-27136232IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.2E-18252345IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019369.02E-16258352IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086315.481259356IPR003340B3 DNA binding domain
SMARTSM010191.3E-26260356IPR003340B3 DNA binding domain
PfamPF023625.0E-19265353IPR003340B3 DNA binding domain
CDDcd100171.62E-17268352No hitNo description
Gene3DG3DSA:2.40.330.102.0E-17401506IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.47E-18404504IPR015300DNA-binding pseudobarrel domain
CDDcd100179.15E-12408504No hitNo description
PfamPF023621.1E-14409506IPR003340B3 DNA binding domain
PROSITE profilePS5086312.915409506IPR003340B3 DNA binding domain
SMARTSM010193.9E-17409507IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 513 aa     Download sequence    Send to blast
MVNKGFFKPL LPGFHSHLTI PVAFFLKYIE GTNEHHTAKL RSDASMITWQ VKIEDGKKLT  60
EGWKEFALAH DLRIGDILIF RQEKDMAFHV TLLGPSDCEI QYESCSEEEN NLGKIPKKMN  120
SKREAESSSS LDPSCFKTNI WPSSLRYDTL NLPKSFVRAN GLETSCGGEI VLMNEKGRPW  180
TLVLKQKLSG TTYIRRGWRR FCIANRLKTG GVYTFKLIQS GRTPVLLLSS KESESESEER  240
NFEKIQRKKA ESSSLDPSCF VANISRATLR YDTLGLPMKF SRENGLEARC GEIVLMNEKG  300
RTWKLNLKRK RSCGTMYITQ GWRSFRSANG LRAGSSSTFK LIKRGGTLAL RLSSKETEEE  360
EEDCSLKAIE VESLSTEPES DEESSQDDEK IKKHRSTWKA SSSQSQNRFV TLTLRPFNLE  420
KYSLFLPLRF TRWHGINEET KMRLLDKKGV MWSTDLRAGK INNDKIRLVG GWQEFFKANC  480
VKTGESIMLK LIWEGDKRCV LKFCSKVKHE TK*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.65860.0seed
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00082317001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013743898.10.0B3 domain-containing protein REM14-like isoform X1
SwissprotQ8GYM40.0REM14_ARATH; B3 domain-containing protein REM14
TrEMBLA0A078I6V30.0A0A078I6V3_BRANA; BnaA04g14580D protein
STRINGBra032077.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM20422261
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24645.10.0B3 family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]