PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00082315001
Common NameGSBRNA2T00082315001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family B3
Protein Properties Length: 338aa    MW: 38671 Da    PI: 10.1037
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00082315001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B350.83e-16695198
                         EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
                   B3  1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90
                         ffk l     + s+ l +p  f+++h +g +e + t +l++ +s  +W+vk+      ++  lt+GWkeF+ a++L++gD+v+F+ ++++ f
  GSBRNA2T00082315001  6 FFKPL--LPGFHSH-LKIPVAFFSKHiEGRNEHKNTAKLRSdTSEITWKVKI-----EDGLRLTDGWKEFALAHDLRVGDIVIFRQEKDMAF 89
                         66666..5667777.9***********556667779999997888*******.....55678***********************7776777 PP

                         ..EEEEE- CS
                   B3 91 elvvkvfr 98
                           +v++f 
  GSBRNA2T00082315001 90 --HVTLFG 95
                         ..998875 PP
2B378.19.3e-25143227590
                          -..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
                   B3   5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                           +++++l+ ++l++pk+fa+++g+++ +s +++l++e+g sW++ l+ +++ g++++t+GW++F++ ngL++g f++Fkl++r ++
  GSBRNA2T00082315001 143 NVTPSSLRYDMLYIPKSFARANGLET-RSGEIVLMNEKGTSWTLILKRKNSCGTMYITRGWRRFCRVNGLRAGSFFTFKLIQRGGT 227
                          6789999***************9996.556****************98888888**************************996443 PP
3B358.11.7e-18240336199
                          EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                          f++ +++++  +++ l+lp +f+++h++++e+   +tl d++g +W+  l+ +k+s+++ l +G keF kan ++ g++++ kl+++ ++
  GSBRNA2T00082315001 240 FVTLTLKPYEVEKSTLYLPVQFTRRHSINEET--RMTLLDKNGVKWSTDLRSEKRSDKIRLVGGCKEFFKANCVEMGESIIVKLIWDGDT 327
                          667778899999999***********999655..7******************************************************* PP

                          ..EEEEE-S CS
                   B3  91 elvvkvfrk 99 
                          ++v+k+++k
  GSBRNA2T00082315001 328 SCVLKFCSK 336
                          9*****987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.105.8E-233109IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.73E-203103IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.506397IPR003340B3 DNA binding domain
CDDcd100171.36E-16594No hitNo description
SMARTSM010191.4E-21697IPR003340B3 DNA binding domain
PfamPF023625.1E-111494IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.2E-23136229IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019368.83E-23138230IPR015300DNA-binding pseudobarrel domain
CDDcd100174.80E-24139230No hitNo description
PROSITE profilePS5086316.003139236IPR003340B3 DNA binding domain
SMARTSM010196.6E-31140235IPR003340B3 DNA binding domain
PfamPF023621.5E-23142228IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.8E-17235336IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.94E-17237329IPR015300DNA-binding pseudobarrel domain
CDDcd100173.41E-14239334No hitNo description
PfamPF023621.9E-17240336IPR003340B3 DNA binding domain
PROSITE profilePS5086311.096240337IPR003340B3 DNA binding domain
SMARTSM010195.2E-23240337IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    Send to blast
MANQHFFKPL LPGFHSHLKI PVAFFSKHIE GRNEHKNTAK LRSDTSEITW KVKIEDGLRL  60
TDGWKEFALA HDLRVGDIVI FRQEKDMAFH VTLFGPSCCE IQYGACLDDK NKLVKIQSKK  120
KVKKNTKREV ETCTLDPSCY VVNVTPSSLR YDMLYIPKSF ARANGLETRS GEIVLMNEKG  180
TSWTLILKRK NSCGTMYITR GWRRFCRVNG LRAGSFFTFK LIQRGGTLVL PSSSPFQNLF  240
VTLTLKPYEV EKSTLYLPVQ FTRRHSINEE TRMTLLDKNG VKWSTDLRSE KRSDKIRLVG  300
GCKEFFKANC VEMGESIIVK LIWDGDTSCV LKFCSKV*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.191400.0seed
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00082315001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009140572.10.0PREDICTED: B3 domain-containing protein REM14-like
SwissprotQ8GYM41e-115REM14_ARATH; B3 domain-containing protein REM14
TrEMBLA0A078I8580.0A0A078I858_BRANA; BnaA04g14560D protein
STRINGBra032078.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM20422261
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24645.11e-113B3 family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]