PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00082306001
Common NameGSBRNA2T00082306001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family WRKY
Protein Properties Length: 326aa    MW: 35220 Da    PI: 10.3229
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00082306001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY97.96.5e-31251309360
                          -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS-- CS
                 WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhek 60 
                          D+y+WrKYGqK++kgs++pr+YY+C++  gCp++k+ver+ +dp+++++tYegeH+h+k
  GSBRNA2T00082306001 251 DEYSWRKYGQKPIKGSPHPRGYYKCSTFrGCPARKHVERALDDPTMLVVTYEGEHRHQK 309
                          9************************8766****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105336.0E-17198247IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.802.0E-32237309IPR003657WRKY domain
PROSITE profilePS5081130.021244310IPR003657WRKY domain
SuperFamilySSF1182906.41E-26248309IPR003657WRKY domain
SMARTSM007742.6E-36249309IPR003657WRKY domain
PfamPF031061.4E-26251308IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0042742Biological Processdefense response to bacterium
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005516Molecular Functioncalmodulin binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    Send to blast
MTVDIMRFPK MEDQTAIQEA ASQGLKSMEH LISVLSNRPK DHNADCSEIT DFTVSKFKKV  60
ISLLNRTGHA RFRRGPVQSP PSSSSSSAAS PPLPPVSHQT PPSQLSPPAP VITPGSFVQS  120
HPQSLTLDFT GPTVFGAKTK STEIVEFAKE CFSVSSNSSF MSSAITGDGS VSKGSSIFLA  180
PAPVASSGKP PLAGLPYRKR CFEHDHSQNF SGKISGSGSG KCHCKKSRKN RMKRSVRVPA  240
ISAKIADIPV DEYSWRKYGQ KPIKGSPHPR GYYKCSTFRG CPARKHVERA LDDPTMLVVT  300
YEGEHRHQKS AMNENISSSL VFGSA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A7e-202463081475Probable WRKY transcription factor 4
2lex_A7e-202463081475Probable WRKY transcription factor 4
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.49200.0seed
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00278DAPTransfer from AT2G24570Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00082306001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ3841020.0FJ384102.1 Brassica napus cultivar Westar WRKY transcription factor 17 (WRKY17) mRNA, WRKY17-2 allele, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001302795.10.0probable WRKY transcription factor 17
SwissprotQ9SJA81e-176WRK17_ARATH; Probable WRKY transcription factor 17
TrEMBLA0A078I8X50.0A0A078I8X5_BRANA; BnaA04g14500D protein
STRINGBra032084.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM25082772
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24570.11e-158WRKY DNA-binding protein 17
Publications ? help Back to Top
  1. Ali MA,Wieczorek K,Kreil DP,Bohlmann H
    The beet cyst nematode Heterodera schachtii modulates the expression of WRKY transcription factors in syncytia to favour its development in Arabidopsis roots.
    PLoS ONE, 2014. 9(7): p. e102360
    [PMID:25033038]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  3. Ali MA, et al.
    Transcription factors WRKY11 and WRKY17 are involved in abiotic stress responses in Arabidopsis.
    J. Plant Physiol., 2018. 226: p. 12-21
    [PMID:29689430]