PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00082020001
Common NameGSBRNA2T00082020001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family SBP
Protein Properties Length: 320aa    MW: 36211.2 Da    PI: 8.4839
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00082020001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP133.76e-4286161277
                          -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS
                  SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 
                          Cqv+gC++dls+ k+yh+rh+vCe+hsk++vv+v+g+eqrfCqqCsrfh l efD++krsCrrrLa+hnerrrk++
  GSBRNA2T00082020001  86 CQVHGCNMDLSSSKDYHKRHRVCEAHSKTSVVIVNGIEQRFCQQCSRFHFLLEFDNGKRSCRRRLAGHNERRRKPS 161
                          **************************************************************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.104.4E-3479147IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.72783160IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.44E-3984164IPR004333Transcription factor, SBP-box
PfamPF031103.3E-3286159IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    Send to blast
MDSWSYGTSL LPSDSFPENP RSIMAQGLSN EFDKVDDVNG LCAVSSSSNL SSLDFKLRSF  60
MDYGNYDGNT SSTAKKPRAS SSSPLCQVHG CNMDLSSSKD YHKRHRVCEA HSKTSVVIVN  120
GIEQRFCQQC SRFHFLLEFD NGKRSCRRRL AGHNERRRKP SFYFLHGKQQ RRRHKLLPQG  180
NKFHGRLVSF KDEPMFPAEN MSFYSPEAAS GVSSIWDLHE AAPPRYTCAH SLLSAQSQQH  240
LSETQNQTLN ASIIDYHHMQ PLRTDLGNSK TDSSSCNGKG SSTVDLLQLS SHLQRIEQQQ  300
RSFTNDDVKH EYNNELYFP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A8e-3179159484squamosa promoter binding protein-like 4
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed constitutively during plant development, weak increase during flowering. {ECO:0000269|PubMed:10524240, ECO:0000269|PubMed:14573523}.
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00082020001
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Negatively regulated by microRNAs miR156 and miR157. {ECO:0000305|PubMed:12202040}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1892981e-158AC189298.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB028I01, complete sequence.
GenBankAC1894581e-158AC189458.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB073F16, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013588609.10.0PREDICTED: squamosa promoter-binding-like protein 6
RefseqXP_013588610.10.0PREDICTED: squamosa promoter-binding-like protein 6
SwissprotQ94JW81e-112SPL6_ARATH; Squamosa promoter-binding-like protein 6
TrEMBLA0A078JQD30.0A0A078JQD3_BRANA; BnaCnng61400D protein
STRINGBo6g108620.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM92752435
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69170.11e-101SBP family protein
Publications ? help Back to Top
  1. Jorgensen SA,Preston JC
    Differential SPL gene expression patterns reveal candidate genes underlying flowering time and architectural differences in Mimulus and Arabidopsis.
    Mol. Phylogenet. Evol., 2014. 73: p. 129-39
    [PMID:24508602]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  3. Xu M, et al.
    Developmental Functions of miR156-Regulated SQUAMOSA PROMOTER BINDING PROTEIN-LIKE (SPL) Genes in Arabidopsis thaliana.
    PLoS Genet., 2016. 12(8): p. e1006263
    [PMID:27541584]