PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00081938001
Common NameGSBRNA2T00081938001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C3H
Protein Properties Length: 400aa    MW: 42894.1 Da    PI: 8.9178
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00081938001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH34.92.5e-11326327
                         S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH  3 telCrffartGtCkyGdrCkFaHgp 27
                          elCr+f++ G C+yG+rC++ H++
  GSBRNA2T00081938001  3 KELCRNFQQ-GSCRYGERCRYLHPQ 26
                         69*******.*************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003561.2E-7126IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.924127IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.22E-6225IPR000571Zinc finger, CCCH-type
PfamPF006429.7E-9326IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.0E-8326IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005635Cellular Componentnuclear envelope
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 400 aa     Download sequence    Send to blast
MRKELCRNFQ QGSCRYGERC RYLHPQQTKP NNPFGFGTQQ QQNKTSNNPF GFGVQGGSNS  60
NRPNQSQQPF QNTWQRNPSS GSGASTQQSG KQTQQADHKC TDPAACKRVI QEDLKNERPM  120
WKLTCYAHCK HLPCDVSGDV SYEELRAMAY EESKRGIPLQ SIVERERNLQ NAKVAEFENF  180
LRSPYRGAVT ANQTPSIFPP ATQVNSSPPG GFSAFNQQPA FPNTNAGGGG PPNPFGRFNQ  240
QPNAFSVNTP QPAPSGPSGF QSQPSSFGPG PAAPSAFQPS VSFKPASFGP GPVAPSGFQS  300
QPASFGPGPG LSTPPQNSSI FPSVTPTPAF NSNQNNQTGF SFNSPVASFT SPAVDTTNTP  360
SGTELQAGGA PVDTSIWLKE KWNPGEIPEQ APPDAFVHR*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.89890.0seed
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00081938001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1894931e-175AC189493.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB084P16, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013649907.10.0zinc finger CCCH domain-containing protein 16-like isoform X1
SwissprotQ9FWS31e-179C3H16_ARATH; Zinc finger CCCH domain-containing protein 16
TrEMBLA0A078I3J70.0A0A078I3J7_BRANA; BnaA07g32050D protein
TrEMBLA0A397YYJ80.0A0A397YYJ8_BRACM; Uncharacterized protein
STRINGBra015851.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM107242731
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75340.21e-152C3H family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]