PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00081778001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family TALE
Protein Properties Length: 686aa    MW: 78361.5 Da    PI: 8.0946
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00081778001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox25.62e-084374741954
                          HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
             Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                          Fe   ++yp+ +++  LA+++gL+  qV++WF N R +
  GSBRNA2T00081778001 437 FEHflHPYPKDSDKIMLARQTGLSRGQVSNWFINARVR 474
                          554459******************************88 PP
2BELL126.51e-40304375172
                 BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                          erqel++k +kLls+l+eVd+rYkqy++q+q+v+ssF+++ag+g+akpYt+lAl++iSrhFr+L+dai++qi
  GSBRNA2T00081778001 304 ERQELHNKLTKLLSMLDEVDRRYKQYYQQMQIVVSSFDVIAGYGAAKPYTALALQTISRHFRSLRDAISGQI 375
                          79*********************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005741.3E-71239373IPR006563POX domain
PfamPF075265.2E-49245372IPR006563POX domain
PROSITE profilePS5007111.791415478IPR001356Homeobox domain
SMARTSM003898.4E-9418482IPR001356Homeobox domain
CDDcd000866.03E-11418479No hitNo description
SuperFamilySSF466892.87E-16419484IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.5E-26421483IPR009057Homeodomain-like
PfamPF059201.4E-17435474IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 686 aa     Download sequence    Send to blast
MWFDLIPPAN ILIRDFSQAL FLYYSSMKTK GSLSSFNTVY YKISVLLQKK RKSFTFCNLL  60
DHHFHFFNFN IRFSFVFFNK AAVYIQDKGL WNSTDPRNTL HCYISMDYQE ARFLPGNAMI  120
HMNPTVSYSE EVAGKERTEA NNVSASQETQ AYSRFGGVSQ MQDIQGFGSW RDQACDRSGF  180
QPMSAIAGPT GVHQTGQGLS LSLGSQILPG IHQGMSPRPE HFRGNEYATQ SISVGNPNMD  240
VVRTIPNSKY LKAAQELLDE AVNVKKSLKQ FQPEGDKNKE NPQETDKNPQ DSNMNPPAEI  300
SQSERQELHN KLTKLLSMLD EVDRRYKQYY QQMQIVVSSF DVIAGYGAAK PYTALALQTI  360
SRHFRSLRDA ISGQIVVTRK CLGEQDGSDG KGVGTISRLK YVDQHLRQQR GFMQPQAWRP  420
QRGLPENSVL VLRAWLFEHF LHPYPKDSDK IMLARQTGLS RGQVSNWFIN ARVRLWKPMV  480
EEIYKEEFTE HDSNSSSDST PKMSEVRPVV ADDEDRAQEL PQDHGHEYGV ETCGMVQGGH  540
QMDGGRFISI EPTYHVAEIS RFGGGGXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX  600
XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXN  660
IVHQCLIFHS LQYCMITKPY IVVIK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A2e-14424482563Homeobox protein Meis2
3k2a_B2e-14424482563Homeobox protein Meis2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00081778001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013724992.10.0BEL1-like homeodomain protein 6
RefseqXP_013724993.10.0BEL1-like homeodomain protein 6
SwissprotO656850.0BLH6_ARATH; BEL1-like homeodomain protein 6
TrEMBLA0A078I5X80.0A0A078I5X8_BRANA; BnaA03g52940D protein
STRINGBra017666.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM28692563
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34610.20.0BEL1-like homeodomain 6
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Cassan-Wang H, et al.
    Identification of novel transcription factors regulating secondary cell wall formation in Arabidopsis.
    Front Plant Sci, 2013. 4: p. 189
    [PMID:23781226]