PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00081723001

Common Name

GSBRNA2T00081723001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

BBR-BPC

Protein Properties

Length: 571aa MW: 65234.2 Da PI: 8.5634

Description

BBR-BPC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00081723001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GAGA_bind	329.3	1.1e-100	302	570	1	301
GAGA_bind 1 mdddgsrernkgyyepa.aslkenlglqlmssiaerdaki....rernlalsekkaavaerd.....maflqrdkalaernkalverdnk 80 mdddg+ rn+gyyepa a++k nlglqlm si +r++k+ r+ nl +++++++++++ m++ +++++ +++k GSBRNA2T00081723001 302 MDDDGF--RNWGYYEPAaATFKGNLGLQLMPSI-DRNTKPfltgRDPNL-MIGQNGPYHHHPeppinMSY----NWINQ-------HKDK 376 9999..9***999**********.9**********.******9988888888....**.......789 PP GAGA_bind 81 llalllvenslasalpvgvqvlsgtksidslqqlsepqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkk 170 ++++l+v+++ p++ ++l++t+s+ s+++ +q++d+ +++ +++ee ++++k++k + ++ ++++k+kk +k+k++ GSBRNA2T00081723001 377 FFNMLPVTTT-----PNYGNILPETSSAPSMRH---HQTTDEYPGTH-------EQVEEIVQTNKKRKPN--TKPGATTKAKKPRKPKEE 449 ****9986.....9*******997766...56666666632.......2333433333333333..466788888888888884 PP GAGA_bind 171 sekskkkvkkesaderskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKm 260 s+ks ++k kks+d+v+ngv++D+s+lPvPvC+CtGa++qCY+WG+GGWqSaCCtt+iS++PLP+stkrrgaRi+grKm GSBRNA2T00081723001 450 SDKS----------IKAKPAKKSVDFVINGVNMDISGLPVPVCTCTGAPQQCYRWGCGGWQSACCTTNISMHPLPMSTKRRGARISGRKM 529 3222..........2468899***************************************************************** PP GAGA_bind 261 SqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301 Sqgafkk+LekLa++G++++np+DLk+hWA+HGtnkfvtir GSBRNA2T00081723001 530 SQGAFKKVLEKLASDGFNFGNPIDLKSHWARHGTNKFVTIR 570 **************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF06217	1.5E-92	302	570	IPR010409	GAGA-binding transcriptional activator
SMART	SM01226	1.9E-158	302	570	IPR010409	GAGA-binding transcriptional activator

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 571 aa Download sequence Send to blast
MDLPRDVDDY IKDTIDHSLG IPISIDALQN KLSAAQESQR RLREQYSSLV SRLKEKEQVI 60 ELARSESSIN AQAVKKFVKE NGKLSGECED LVKQCKKWER ECFLYHQDRE ALMDFGNESD 120 ERARESESKV RELEEQMKTM SDVMKKSKVE SDKKLEEEER LVDSVLSSFV SEEEIKFGRV 180 FLEANIEDQS LFNRWEELKP STRKAVSLVA MVKRIEKEKE CLILNLAKAE QEVEIVCEQN 240 RELDEENRKL LKQCSSSSGY LQCSAERSNK AKNSLKEPRS FNPILMFLRI QLRNYSIHIF 300 EMDDDGFRNW GYYEPAAATF KGNLGLQLMP SIDRNTKPFL TGRDPNLMIG QNGPYHHHPE 360 PPINMSYNWI NQHKDKFFNM LPVTTTPNYG NILPETSSAP SMRHHQTTDE YPGTHEQVEE 420 IVQTNKKRKP NTKPGATTKA KKPRKPKEES DKSIKAKPAK KSVDFVINGV NMDISGLPVP 480 VCTCTGAPQQ CYRWGCGGWQ SACCTTNISM HPLPMSTKRR GARISGRKMS QGAFKKVLEK 540 LASDGFNFGN PIDLKSHWAR HGTNKFVTIR *

Sequence ? help Back to Top

Protein Sequence Length: 571 aa Download sequence Send to blast

MDLPRDVDDY IKDTIDHSLG IPISIDALQN KLSAAQESQR RLREQYSSLV SRLKEKEQVI  60
ELARSESSIN AQAVKKFVKE NGKLSGECED LVKQCKKWER ECFLYHQDRE ALMDFGNESD  120
ERARESESKV RELEEQMKTM SDVMKKSKVE SDKKLEEEER LVDSVLSSFV SEEEIKFGRV  180
FLEANIEDQS LFNRWEELKP STRKAVSLVA MVKRIEKEKE CLILNLAKAE QEVEIVCEQN  240
RELDEENRKL LKQCSSSSGY LQCSAERSNK AKNSLKEPRS FNPILMFLRI QLRNYSIHIF  300
EMDDDGFRNW GYYEPAAATF KGNLGLQLMP SIDRNTKPFL TGRDPNLMIG QNGPYHHHPE  360
PPINMSYNWI NQHKDKFFNM LPVTTTPNYG NILPETSSAP SMRHHQTTDE YPGTHEQVEE  420
IVQTNKKRKP NTKPGATTKA KKPRKPKEES DKSIKAKPAK KSVDFVINGV NMDISGLPVP  480
VCTCTGAPQQ CYRWGCGGWQ SACCTTNISM HPLPMSTKRR GARISGRKMS QGAFKKVLEK  540
LASDGFNFGN PIDLKSHWAR HGTNKFVTIR *

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Bna.16148	0.0	microspore-derived embryo\| seed

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00081723001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC189499	0.0	AC189499.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB086M23, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A078I334	0.0	A0A078I334_BRANA; BnaA06g09500D protein
STRING	Bra026196.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2893	27	69

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G14685.3	1e-153	basic pentacysteine 2

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]