PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00081341001
Common NameGSBRNA2T00081341001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ARF
Protein Properties Length: 1114aa    MW: 123131 Da    PI: 6.9199
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00081341001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B372.65e-23115216199
                          EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 
                          f+k+lt sd++++g +++p++ ae++      +++++++ +l+ +d + ++W++++iyr++++r++lt+GW+ Fv+ ++L +gD+v+F +
  GSBRNA2T00081341001 115 FCKTLTASDTSTHGGFSVPRRAAEKIfpaldfSMQPPCQ-ELVAKDIHDNTWTFRHIYRGQPKRHLLTTGWSVFVSNKRLFAGDSVLFIR 203
                          99*****************************98888885.9************************************************5 PP

                          -SSSEE..EEEEE-S CS
                   B3  85 dgrsefelvvkvfrk 99 
                            + +++l+++++r+
  GSBRNA2T00081341001 204 --DGKAQLLLGIRRA 216
                          ..4678889999997 PP

2Auxin_resp1163.2e-38241323183
           Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                          aaha +++s+F+++YnPra+++eFvv+++k+ ka++ +vs+GmRf+m fete++  rr++Gtv+g+sdldpvrW+ S+Wr+L+
  GSBRNA2T00081341001 241 AAHANANNSPFTIFYNPRAAPAEFVVPLAKYTKAMYAQVSLGMRFRMIFETEECGVRRYMGTVTGISDLDPVRWKSSQWRNLQ 323
                          799******************************************************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.57E-42105244IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.7E-41109230IPR015300DNA-binding pseudobarrel domain
CDDcd100177.47E-20114215No hitNo description
SMARTSM010192.2E-22115217IPR003340B3 DNA binding domain
PROSITE profilePS5086312.196115217IPR003340B3 DNA binding domain
PfamPF023622.7E-21115216IPR003340B3 DNA binding domain
PfamPF065072.5E-33241323IPR010525Auxin response factor
PfamPF023091.9E-99341022IPR033389AUX/IAA domain
PROSITE profilePS5174526.9569361029IPR000270PB1 domain
SuperFamilySSF542779.81E-99491014No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1114 aa     Download sequence    Send to blast
MLTTSLININ SELWHACAGP LISLPPAGSL VVYFPQGHSE QVAASMQKQT DFIPSYPNLP  60
SKLICMLQNV TLNADPETDE VYAQMTLQPV NKYDRDALLA SDMGLKLNRQ PNEFFCKTLT  120
ASDTSTHGGF SVPRRAAEKI FPALDFSMQP PCQELVAKDI HDNTWTFRHI YRGQPKRHLL  180
TTGWSVFVSN KRLFAGDSVL FIRDGKAQLL LGIRRANRQQ PALSSSVISS DSMHIGVLAA  240
AAHANANNSP FTIFYNPRAA PAEFVVPLAK YTKAMYAQVS LGMRFRMIFE TEECGVRRYM  300
GTVTGISDLD PVRWKSSQWR NLQIGWDESA AGDRPSRVSV WDIEPVLTPF YICPPPFFRP  360
RFAGQPGMPD DETDMESALK RAMPWLDNGL EMKDSSSSIF PGLSLVQWMS MQQQNGQLPS  420
SAAAAQSGFF PSMLPPATGM HNNLGGTDDP SKLLSFQTPP GGISSANLQF NKPNPQASMS  480
QLPQPPTTLS QQQQPQQLLH SSLNHQQQQS QPQQQQTLQQ QHHQPLHQQT QQLQQQQQQL  540
QSHPHPQPQS HQQAAQQHQA QQASMHHLQP PVVSVSMASS VIVPPSSSLN QNCQQQQQQS  600
TQLQHTHRHL GASTSQSNVV ETSKSSSSNP MSIPPHDTQF PRQLEQQQPP VLVNGPNQQH  660
KAQQTHQQMF QQSLLEQPHL QFQLLQRLQQ QQQQFLMPGS SSLQSQLLHQ QLQQPPPQML  720
VSRPQDKQNP LVGGGGVKAY SGITDGGDAP SSSTSPSTNN CQISSSTFLN RTQSGPPTLM  780
PDAAVDISGS LVQDLYSKSD MRLKHELAGP QKSKASLTDH HHQLEASASG TSFLAPTFGL  840
DSDSRNSLLA GANVDNGFVP DTLLSRGYDS QKDLQNMLSN YGGVTNDIGT EMSTSAIRTQ  900
SFGIPNVPAI SNDVAVNDAG GVLGGGLWPT QTQRMRTYTK VQKRGSVGRS IDVNRYRGYD  960
ELRHDLARMF GIEGQLEDPQ TSDWKLVYVD HENDILLVGD DPWEEFVNCV QSIKILSSAE  1020
VQQMSLDGNF AGVPVTNQAC SGGDSGNAWR GHYDDNSATS FNRFPLDTVE YSLVKYLELS  1080
LYFTRRFYQF GMHVNGKRSP EHSVLVPVRL FNF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-166934451388Auxin response factor 5
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00081341001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJN9794700.0JN979470.1 Brassica rapa subsp. pekinensis auxin response factor 7-2 (ARF7-2) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006400643.20.0auxin response factor 7 isoform X1
TrEMBLA0A078I6P40.0A0A078I6P4_BRANA; Auxin response factor
STRINGXP_006400643.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM26292665
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G20730.20.0ARF family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]