PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00081341001 | ||||||||
Common Name | GSBRNA2T00081341001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | ARF | ||||||||
Protein Properties | Length: 1114aa MW: 123131 Da PI: 6.9199 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 72.6 | 5e-23 | 115 | 216 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 f+k+lt sd++++g +++p++ ae++ +++++++ +l+ +d + ++W++++iyr++++r++lt+GW+ Fv+ ++L +gD+v+F + GSBRNA2T00081341001 115 FCKTLTASDTSTHGGFSVPRRAAEKIfpaldfSMQPPCQ-ELVAKDIHDNTWTFRHIYRGQPKRHLLTTGWSVFVSNKRLFAGDSVLFIR 203 99*****************************98888885.9************************************************5 PP -SSSEE..EEEEE-S CS B3 85 dgrsefelvvkvfrk 99 + +++l+++++r+ GSBRNA2T00081341001 204 --DGKAQLLLGIRRA 216 ..4678889999997 PP | |||||||
2 | Auxin_resp | 116 | 3.2e-38 | 241 | 323 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aaha +++s+F+++YnPra+++eFvv+++k+ ka++ +vs+GmRf+m fete++ rr++Gtv+g+sdldpvrW+ S+Wr+L+ GSBRNA2T00081341001 241 AAHANANNSPFTIFYNPRAAPAEFVVPLAKYTKAMYAQVSLGMRFRMIFETEECGVRRYMGTVTGISDLDPVRWKSSQWRNLQ 323 799******************************************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 1.57E-42 | 105 | 244 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 1.7E-41 | 109 | 230 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 7.47E-20 | 114 | 215 | No hit | No description |
SMART | SM01019 | 2.2E-22 | 115 | 217 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.196 | 115 | 217 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.7E-21 | 115 | 216 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 2.5E-33 | 241 | 323 | IPR010525 | Auxin response factor |
Pfam | PF02309 | 1.9E-9 | 934 | 1022 | IPR033389 | AUX/IAA domain |
PROSITE profile | PS51745 | 26.956 | 936 | 1029 | IPR000270 | PB1 domain |
SuperFamily | SSF54277 | 9.81E-9 | 949 | 1014 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009734 | Biological Process | auxin-activated signaling pathway | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1114 aa Download sequence Send to blast |
MLTTSLININ SELWHACAGP LISLPPAGSL VVYFPQGHSE QVAASMQKQT DFIPSYPNLP 60 SKLICMLQNV TLNADPETDE VYAQMTLQPV NKYDRDALLA SDMGLKLNRQ PNEFFCKTLT 120 ASDTSTHGGF SVPRRAAEKI FPALDFSMQP PCQELVAKDI HDNTWTFRHI YRGQPKRHLL 180 TTGWSVFVSN KRLFAGDSVL FIRDGKAQLL LGIRRANRQQ PALSSSVISS DSMHIGVLAA 240 AAHANANNSP FTIFYNPRAA PAEFVVPLAK YTKAMYAQVS LGMRFRMIFE TEECGVRRYM 300 GTVTGISDLD PVRWKSSQWR NLQIGWDESA AGDRPSRVSV WDIEPVLTPF YICPPPFFRP 360 RFAGQPGMPD DETDMESALK RAMPWLDNGL EMKDSSSSIF PGLSLVQWMS MQQQNGQLPS 420 SAAAAQSGFF PSMLPPATGM HNNLGGTDDP SKLLSFQTPP GGISSANLQF NKPNPQASMS 480 QLPQPPTTLS QQQQPQQLLH SSLNHQQQQS QPQQQQTLQQ QHHQPLHQQT QQLQQQQQQL 540 QSHPHPQPQS HQQAAQQHQA QQASMHHLQP PVVSVSMASS VIVPPSSSLN QNCQQQQQQS 600 TQLQHTHRHL GASTSQSNVV ETSKSSSSNP MSIPPHDTQF PRQLEQQQPP VLVNGPNQQH 660 KAQQTHQQMF QQSLLEQPHL QFQLLQRLQQ QQQQFLMPGS SSLQSQLLHQ QLQQPPPQML 720 VSRPQDKQNP LVGGGGVKAY SGITDGGDAP SSSTSPSTNN CQISSSTFLN RTQSGPPTLM 780 PDAAVDISGS LVQDLYSKSD MRLKHELAGP QKSKASLTDH HHQLEASASG TSFLAPTFGL 840 DSDSRNSLLA GANVDNGFVP DTLLSRGYDS QKDLQNMLSN YGGVTNDIGT EMSTSAIRTQ 900 SFGIPNVPAI SNDVAVNDAG GVLGGGLWPT QTQRMRTYTK VQKRGSVGRS IDVNRYRGYD 960 ELRHDLARMF GIEGQLEDPQ TSDWKLVYVD HENDILLVGD DPWEEFVNCV QSIKILSSAE 1020 VQQMSLDGNF AGVPVTNQAC SGGDSGNAWR GHYDDNSATS FNRFPLDTVE YSLVKYLELS 1080 LYFTRRFYQF GMHVNGKRSP EHSVLVPVRL FNF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 1e-166 | 9 | 344 | 51 | 388 | Auxin response factor 5 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00081341001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JN979470 | 0.0 | JN979470.1 Brassica rapa subsp. pekinensis auxin response factor 7-2 (ARF7-2) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006400643.2 | 0.0 | auxin response factor 7 isoform X1 | ||||
TrEMBL | A0A078I6P4 | 0.0 | A0A078I6P4_BRANA; Auxin response factor | ||||
STRING | XP_006400643.1 | 0.0 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2629 | 26 | 65 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G20730.2 | 0.0 | ARF family protein |
Publications ? help Back to Top | |||
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