PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00081105001
Common NameGSBRNA2T00081105001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family HD-ZIP
Protein Properties Length: 649aa    MW: 73353.3 Da    PI: 5.8517
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00081105001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox54.91.5e-172979656
                         S--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
             Homeobox  6 tftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                         +++++q++ Le++F+++++p++++r++  ++l+L  +qVk+WFqN+R++ k
  GSBRNA2T00081105001 29 RHSPQQIQMLEAYFKECPHPNESQRQKFCNELNLGIDQVKFWFQNKRTQSK 79
                         689*********************************************988 PP
2START103.63.4e-332094276206
                          HHHHHHHHHHHC-TT-EEEE...EXCCTTEEEEEEESSS.......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEE CS
                START   6 aaqelvkkalaeepgWvkss...esengdevlqkfeeskv......dsgealrasgvvdmvlallveellddkeqWdetla....kaetl 82 
                          a +el ++ l +e++Wv ss   +  + +e++ kf+ s         ++e +++++vv+ +++ l   +ld   +W+  ++    kae++
  GSBRNA2T00081105001 209 AVEELKQLFLTDEALWVMSSiegTYVIDQESYEKFSHSIKhfrnlsARVESSKDVTVVPIEATSLIDMFLDLE-KWKMLFPtivnKAEMI 297
                          56788899999*********988777778888888776668899999****************7777777766.99999988899***** PP

                          EEECTT.......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEE CS
                START  83 evissg.......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskv 164
                           ++ s        ++lq +  +l  lsplvp R+f++vR+++q g+g w+i+dvS    ++ + s+s+ +   +pSg+li++++n h++v
  GSBRNA2T00081105001 298 HTLGSElpikencNVLQMIWEQLHILSPLVPpREFMIVRCCQQIGEGLWIIADVSQHIVNSDQVSPSCYK---RPSGCLIRSLPNAHTEV 384
                          *******************************************************887777776777766...***************** PP

                          EEEE-EE--SSXX.HHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
                START 165 twvehvdlkgrlp.hwllrslvksglaegaktwvatlqrqcek 206
                           w+ehv+++     h ++r lv+ g   ga++w  tl+r ce+
  GSBRNA2T00081105001 385 SWIEHVEVDHTADtHRMYRELVSGGSGYGARRWIVTLERMCER 427
                          *********99988***************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.607.4E-17679IPR009057Homeodomain-like
SuperFamilySSF466892.57E-161281IPR009057Homeodomain-like
PROSITE profilePS5007115.4022181IPR001356Homeobox domain
SMARTSM003891.6E-132185IPR001356Homeobox domain
CDDcd000868.94E-142881No hitNo description
PfamPF000464.7E-152979IPR001356Homeobox domain
PROSITE profilePS5084836.88195430IPR002913START domain
SuperFamilySSF559612.33E-24198428No hitNo description
CDDcd088753.47E-82200426No hitNo description
SMARTSM002341.5E-16204427IPR002913START domain
Gene3DG3DSA:3.30.530.202.9E-5209390IPR023393START-like domain
PfamPF018527.3E-27209427IPR002913START domain
SuperFamilySSF559617.42E-5449600No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 649 aa     Download sequence    Send to blast
MDYDGAGNQD NEHYTSVNAM SKEKRICHRH SPQQIQMLEA YFKECPHPNE SQRQKFCNEL  60
NLGIDQVKFW FQNKRTQSKA QDERTSNILL RAENEKLQCE NAAMLEALKN VTCPPCGGPP  120
FGGEEREPNL HKLRLEGDSL VAAKNKYRQT MLDSLTSVQR QQTFEALTSY GTNPYNPFEQ  180
PSSSESQTIQ PQLLSQMDIP QLSETAAIAV EELKQLFLTD EALWVMSSIE GTYVIDQESY  240
EKFSHSIKHF RNLSARVESS KDVTVVPIEA TSLIDMFLDL EKWKMLFPTI VNKAEMIHTL  300
GSELPIKENC NVLQMIWEQL HILSPLVPPR EFMIVRCCQQ IGEGLWIIAD VSQHIVNSDQ  360
VSPSCYKRPS GCLIRSLPNA HTEVSWIEHV EVDHTADTHR MYRELVSGGS GYGARRWIVT  420
LERMCERMAL STILIMPATD WSETIPTVEG RKSVMKLGER MVKIFSEMLI MSGKIEFPQQ  480
SKGGVRILIR MNMKPGQIPG LVASAASCLS IPLTPLQVFN SLRSNDTRHQ WDVLCHGNAI  540
TETARIFTGS SGTNYINLLQ PTPPWDIGQN MVQEPHKTMM VLQECYMDAL GGMIVYSPLD  600
MATMSIAASG EVDPLNIPIL PQATTIGELY SCWLFRFLSL MKIVRPEM*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in the embryo at early stage and in the endosperm. {ECO:0000269|PubMed:16778018}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00081105001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009126392.10.0PREDICTED: homeobox-leucine zipper protein HDG8-like
SwissprotQ9M9P40.0HDG8_ARATH; Homeobox-leucine zipper protein HDG8
TrEMBLA0A078I4Z00.0A0A078I4Z0_BRANA; BnaA02g04510D protein
STRINGBra020066.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM127911530
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03260.10.0homeodomain GLABROUS 8
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]