PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00081075001
Common NameGSBRNA2T00081075001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family NF-YC
Protein Properties Length: 688aa    MW: 74905.1 Da    PI: 7.7245
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00081075001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC57.33.4e-186861898
                NF-YC 18 nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98
                         ++++P +rikki+++dedv +i+  +P l+ska elf+ +l   ++  + +   +tl+   ++++v   ++fdfl div +
  GSBRNA2T00081075001  6 QTRFPATRIKKIMQTDEDVGKIAMAVPLLVSKALELFLQDLCNHTYDVTLSRGAKTLNSVHLKQCVHAFNVFDFLRDIVSK 86
                         689***************************************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.101.5E-24272IPR009072Histone-fold
PfamPF008084.8E-17871IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
SuperFamilySSF471132.29E-181888IPR009072Histone-fold
Gene3DG3DSA:3.90.550.107.5E-42239386IPR029044Nucleotide-diphospho-sugar transferases
CDDcd041981.62E-70240455No hitNo description
SuperFamilySSF534487.74E-37240478IPR029044Nucleotide-diphospho-sugar transferases
PfamPF004831.0E-13241479IPR005835Nucleotidyl transferase domain
Gene3DG3DSA:3.90.550.107.5E-42422488IPR029044Nucleotide-diphospho-sugar transferases
SuperFamilySSF534487.74E-37530567IPR029044Nucleotide-diphospho-sugar transferases
Gene3DG3DSA:3.90.550.107.5E-42543562IPR029044Nucleotide-diphospho-sugar transferases
Gene3DG3DSA:2.160.10.103.4E-21563677No hitNo description
CDDcd046529.64E-28598678No hitNo description
SuperFamilySSF534487.74E-37604654IPR029044Nucleotide-diphospho-sugar transferases
PfamPF001323.5E-4614649IPR001451Hexapeptide repeat
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009058Biological Processbiosynthetic process
GO:0005634Cellular Componentnucleus
GO:0016779Molecular Functionnucleotidyltransferase activity
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 688 aa     Download sequence    Send to blast
MKKKLQTRFP ATRIKKIMQT DEDVGKIAMA VPLLVSKALE LFLQDLCNHT YDVTLSRGAK  60
TLNSVHLKQC VHAFNVFDFL RDIVSKVPDL GGSEGEDRPA TKRRKLVDES ISNDKDMKVT  120
SQTDFAKHSG GGRGRGRGQG GGRMGNYQSL KFEDESPEGS KSPSPENWSL SHEAATWKKA  180
ASHKGNHTNT ELKVRDFDLN VELDENGEFA TSPERELEGR PGWPLFEIND MKIDSDQREV  240
VILAGGFSSN LQPLVSKEVP KALLPVANRP VLSYVLDLLE SSNLKDLIVV VEGEDAALKV  300
GGWISSACVD RLHVEVAAVA ENVGTAGALR AIAHHLTAKD ILIVSGDIVS DVSPGAVAAT  360
HRRHDASVTA MLCAEPVSGP SESGVAGGKD KTKKPACYDI IGLDSSKQFL LHIATGAEIK  420
KDTRIKKSIL CAAGKMEIRS DLMDSHIYAF KRSVLQKVLD QKPTFRSLKQ DVLPYLVRTQ  480
LRSEVFPDEK TVEDNGKNNM QNNEVVLSQI LSNASLPSFH QVYESGLNSR KTHKCCVYIA  540
DESKYCVRLN SIQAFMDVNR DVIGDANHLS GYTFSSHHNI VHPSAELGSK TTVGPHCMLG  600
EGSQVGDKCS VKRSVIGRHC RIGSNVKVVN SVVMDHATIG DGCSIQGSVI CSNAQLQERV  660
ALRDCQVEAG YVVYAGGEHK GETFARK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6caj_I6e-482396854444Translation initiation factor eIF-2B subunit gamma
6caj_J6e-482396854444Translation initiation factor eIF-2B subunit gamma
6ezo_E6e-482396854444Translation initiation factor eIF-2B subunit gamma
6ezo_F6e-482396854444Translation initiation factor eIF-2B subunit gamma
6k71_E6e-482396854444Translation initiation factor eIF-2B subunit gamma
6k71_F6e-482396854444Translation initiation factor eIF-2B subunit gamma
6k72_E6e-482396854444Translation initiation factor eIF-2B subunit gamma
6k72_F6e-482396854444Translation initiation factor eIF-2B subunit gamma
6o81_I6e-482396854444Translation initiation factor eIF-2B subunit gamma
6o81_J6e-482396854444Translation initiation factor eIF-2B subunit gamma
6o85_I6e-482396854444Translation initiation factor eIF-2B subunit gamma
6o85_J6e-482396854444Translation initiation factor eIF-2B subunit gamma
6o9z_I6e-482396854444Translation initiation factor eIF-2B subunit gamma
6o9z_J6e-482396854444Translation initiation factor eIF-2B subunit gamma
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00081075001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ4876270.0DQ487627.1 Arabidopsis thaliana clone 0000004280_0000003560 unknown protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013676042.10.0translation initiation factor eIF-2B subunit gamma
TrEMBLA0A078I6600.0A0A078I660_BRANA; BnaA02g04240D protein
STRINGBra020041.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM800422
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19490.12e-85NF-YC family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]