PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00080941001

Common Name

GSBRNA2T00080941001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

bZIP

Protein Properties

Length: 307aa MW: 33489.2 Da PI: 7.0873

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00080941001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	20.9	8.1e-07	182	227	18	63
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 18 rrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 +rsR RK+++i+eLe++v L+a +L ++ +l ++ a+l e+ GSBRNA2T00080941001 182 QRSRVRKLQYIAELERRVSMLQAVEADLSVRVASLLQTRATLSLEN 227 79******************************99999999988776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd14703	5.80E-15	176	221	No hit	No description
Gene3D	G3DSA:1.20.5.170	8.8E-6	182	234	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 307 aa Download sequence Send to blast
MSRPGQLPPR CPIPKKLSLN PYADTFYSSS SPVESYISHH HKSSSPTQDS TLEEQPAWLD 60 ELLGDKTDCG GPSPLRRSAS DSVVLLGDIS ADFAGFNQSE EDEESLTSEA CGELESACVY 120 GPNSPRARNS SSFSGSPIAS AFSDYGSQKA PQNADDTVKG SICHPHEADN ACGSNAKRNP 180 GQRSRVRKLQ YIAELERRVS MLQAVEADLS VRVASLLQTR ATLSLENSQM KQQMAILKQD 240 KLIREGEYLL LKKEAQRLNS RLRNFGSSNN NNRLARSYSA GSSIGPRTVS SHLDWNLLDL 300 TKLNLN*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00080941001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY099881	1e-134	AY099881.1 Arabidopsis thaliana unknown protein (At5g04840) mRNA, complete cds.
GenBank	BT008710	1e-134	BT008710.1 Arabidopsis thaliana At5g04840 gene, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013729394.1	0.0	basic leucine zipper 2
TrEMBL	A0A078I6X0	0.0	A0A078I6X0_BRANA; BnaC09g50830D protein
STRING	Bo9g179040.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM13642	7	9

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G42380.2	2e-18	bZIP family protein

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]