PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00080778001
Common NameGSBRNA2T00080778001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB
Protein Properties Length: 281aa    MW: 29921.2 Da    PI: 7.2357
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00080778001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding29.32e-091156346
                         SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHH CS
      Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqk 46
                         +W+ e+d  + +a + +  +    W++Ia+ ++ g++ +q+k+++  
  GSBRNA2T00080778001 11 AWSREDDIAFERALASYTDEsedKWEKIAADVP-GKSVEQIKEHYEV 56
                         7*****************99*************.**********965 PP
2Myb_DNA-binding42.12e-13115159347
                          SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                          +WT++E+ l++ +  ++G+g+W++I+r +  +Rt+ q+ s+ qky
  GSBRNA2T00080778001 115 AWTEDEHRLFLLGLDKYGKGDWRSISRNFVVTRTPTQVASHAQKY 159
                          6*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512937.895762IPR017884SANT domain
SMARTSM007173.2E-9860IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.8E-51057IPR009057Homeodomain-like
CDDcd001673.76E-91158No hitNo description
PfamPF002493.6E-81155IPR001005SANT/Myb domain
SuperFamilySSF466891.87E-101265IPR009057Homeodomain-like
PROSITE profilePS5129417.581107164IPR017930Myb domain
SuperFamilySSF466891.15E-16110165IPR009057Homeodomain-like
SMARTSM007173.2E-10112162IPR001005SANT/Myb domain
TIGRFAMsTIGR015572.4E-17112162IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.601.3E-10115158IPR009057Homeodomain-like
CDDcd001677.16E-10115160No hitNo description
PfamPF002492.5E-11115159IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 281 aa     Download sequence    Send to blast
MTVEEVRDGS AWSREDDIAF ERALASYTDE SEDKWEKIAA DVPGKSVEQI KEHYEVLVED  60
VSRIESGCVP LPAYNSPRGG SGGGGDDGGS TKKGGNSHVG ESKAKSDQER RKGIAWTEDE  120
HRLFLLGLDK YGKGDWRSIS RNFVVTRTPT QVASHAQKYF IRLNSMNKER RRTSIHDITS  180
VGDADVSTPQ GPITGQNNNN NGSAGAVAGG GNKPAKQGVS QQPPPGPPVY GTPSIGPQPV  240
VGTPVSLPAP PHMAFAAPVP GSVVPQMPYT TMPRTPTAHR *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A2e-16980879RADIALIS
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.144081e-151seed
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in young seedlings, developing leaves, sepals and trichomes. {ECO:0000269|PubMed:26243618}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that coordinates abscisic acid (ABA) biosynthesis and signaling-related genes via binding to the specific promoter motif 5'-(A/T)AACCAT-3'. Represses ABA-mediated salt (e.g. NaCl and KCl) stress tolerance. Regulates leaf shape and promotes vegetative growth. {ECO:0000269|PubMed:26243618}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00080778001
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salicylic acid (SA) and gibberellic acid (GA) (PubMed:16463103). Triggered by dehydration and salt stress (PubMed:26243618). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:26243618}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013620090.10.0PREDICTED: transcription factor DIVARICATA-like
RefseqXP_013675762.10.0transcription factor SRM1-like
SwissprotQ9FNN61e-162SRM1_ARATH; Transcription factor SRM1
TrEMBLA0A078I6L10.0A0A078I6L1_BRANA; BnaC02g01090D protein
STRINGBo2g009130.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM35562861
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08520.11e-134MYB family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  2. Wang T, et al.
    Salt-Related MYB1 Coordinates Abscisic Acid Biosynthesis and Signaling during Salt Stress in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1027-41
    [PMID:26243618]
  3. Chen YS, et al.
    Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis.
    Plant Mol. Biol., 2017. 93(3): p. 299-311
    [PMID:27866313]