PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00080527001

Common Name

GSBRNA2T00080527001, GSBRNA2T00080529001, GSBRNA2T00091010001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

HSF

Protein Properties

Length: 141aa MW: 16214 Da PI: 10.8164

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00080527001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	48.6	2.1e-15	10	93	2	89
HHHHHHHHHCTGGGTTTSEES.SSSSEEEES-HHHHHHHTHHH..HSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXX CS HSF_DNA-bind 2 Flkklyeiledeelkelisws.engnsfvvldeeefakkvLpk..yFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkg 89 F +ly+i+ed++ +++isw+ +n+nsf+v+d +++ +++Lpk +n++ Fv +L gF+++ + ++ eF+h++F+++ GSBRNA2T00080527001 10 FYIQLYQIIEDRSSDQIISWNkSNNNSFIVWDLKKLRSNILPKssSVLGRNLTEFVAKLRSHGFRSIVKGPGE-------LEFSHDEFSRS 93 899****************8999************994456679**************99998.......9*****986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.10	6.2E-17	5	93	IPR011991	Winged helix-turn-helix DNA-binding domain
SMART	SM00415	6.8E-12	6	102	IPR000232	Heat shock factor (HSF)-type, DNA-binding
SuperFamily	SSF46785	3.45E-13	7	93	IPR011991	Winged helix-turn-helix DNA-binding domain
Pfam	PF00447	6.5E-13	10	94	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	7.5E-6	10	33	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	7.5E-6	64	76	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 141 aa Download sequence Send to blast
MISKLSTSSF YIQLYQIIED RSSDQIISWN KSNNNSFIVW DLKKLRSNIL PKSSSVLGRN 60 LTEFVAKLRS HGFRSIVKGP GELEFSHDEF SRSPLMKKMM VKALSERIEK FDAQIKAMKC 120 RLKAKKATLN VENLFQNLRI *

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00080527001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009140185.1	5e-94	PREDICTED: heat stress transcription factor A-4a-like
TrEMBL	A0A078I400	8e-97	A0A078I400_BRANA; BnaA02g12520D protein
STRING	Bra025608.1-P	2e-93	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3839	14	57

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G77570.1	1e-25	Winged helix-turn-helix transcription repressor DNA-binding

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]