PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00080444001

Common Name

GSBRNA2T00080444001, LOC106436097

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

WRKY

Protein Properties

Length: 371aa MW: 41411.1 Da PI: 6.4548

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00080444001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	84.8	7.8e-27	208	267	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-.SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkvers.aedpkvveitYegeHnhe 59 +Dg++WrKYGqK+ k ++ pr+YYrC+++ +Cpv+k+v+r+ ++d+++ +tYeg+H+h+ GSBRNA2T00080444001 208 NDGCQWRKYGQKTAKTNPLPRAYYRCSMSsNCPVRKQVQRCgEDDTSAYMTTYEGNHDHP 267 8*************************99******934578899********7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	6.0E-28	192	269	IPR003657	WRKY domain
PROSITE profile	PS50811	24.478	202	269	IPR003657	WRKY domain
SuperFamily	SSF118290	3.66E-24	203	269	IPR003657	WRKY domain
SMART	SM00774	7.0E-33	207	268	IPR003657	WRKY domain
Pfam	PF03106	5.5E-25	208	267	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 371 aa Download sequence Send to blast
MIKEEIDSCV HPLDGGMAES DKEVELDATK AKVDKVREEN EKLKLLLSTF LTEYNSLQMH 60 VSNVIRQQHE ASMKLDDNGH EDLDVDISLT LGRSEQKISK KEEQVKKIIA ENNSINNKEG 120 SEKKIWAHGL GFRIQSFEDL DTNQTMMLDD VSREVKNKNV ENKCLSSRKD VKTARNEDQH 180 ELLEEHEQPG LKKTRVCVKA PCEDPSINDG CQWRKYGQKT AKTNPLPRAY YRCSMSSNCP 240 VRKQVQRCGE DDTSAYMTTY EGNHDHPLPM EATHMAAGTS AAASLLQSGA SSSASLSHFF 300 PFHHFSVSTT NSHPTVTLDL TQPNYDPNQL PNYPLSSSSL SFSSSGRPSP SKSHTLSFSG 360 LRSQAPMNTY *

Sequence ? help Back to Top

Protein Sequence Length: 371 aa Download sequence Send to blast

MIKEEIDSCV HPLDGGMAES DKEVELDATK AKVDKVREEN EKLKLLLSTF LTEYNSLQMH  60
VSNVIRQQHE ASMKLDDNGH EDLDVDISLT LGRSEQKISK KEEQVKKIIA ENNSINNKEG  120
SEKKIWAHGL GFRIQSFEDL DTNQTMMLDD VSREVKNKNV ENKCLSSRKD VKTARNEDQH  180
ELLEEHEQPG LKKTRVCVKA PCEDPSINDG CQWRKYGQKT AKTNPLPRAY YRCSMSSNCP  240
VRKQVQRCGE DDTSAYMTTY EGNHDHPLPM EATHMAAGTS AAASLLQSGA SSSASLSHFF  300
PFHHFSVSTT NSHPTVTLDL TQPNYDPNQL PNYPLSSSSL SFSSSGRPSP SKSHTLSFSG  360
LRSQAPMNTY *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ayd_A	2e-18	207	269	14	74	WRKY transcription factor 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00080444001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KF430052	0.0	KF430052.1 Brassica rapa WRKY transcription factor 36 (WRKY36) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013732506.1	0.0	probable WRKY transcription factor 36
Swissprot	Q9CAR4	1e-164	WRK36_ARATH; Probable WRKY transcription factor 36
TrEMBL	A0A078JTU7	0.0	A0A078JTU7_BRANA; BnaCnng60780D protein
STRING	Bo2g064630.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM13913	18	25

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69810.1	1e-131	WRKY DNA-binding protein 36

Link Out ? help Back to Top
Entrez Gene	106436097

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293] Yang Y, et al. UVR8 interacts with WRKY36 to regulate HY5 transcription and hypocotyl elongation in Arabidopsis. Nat Plants, 2018. 4(2): p. 98-107 [PMID:29379156]