PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00080395001
Common NameGSBRNA2T00080395001, LOC106385152
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family NAC
Protein Properties Length: 236aa    MW: 26509.8 Da    PI: 5.0308
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00080395001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM135.53.6e-4261362127
                  NAM   2 ppGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksgyWkat 86 
                          + GfrF Pt++elvv+yL++++eg++  ++++vi+ +d+++veP++Lp     +++++ ++w+fF++r++++a+g r++r+t sgyWkat
  GSBRNA2T00080395001   6 TTGFRFYPTEDELVVFYLRNQLEGRSgDSMHRVIPVLDVFEVEPSHLPDlageRCRGDAEQWFFFVPRQEREARGGRPSRTTGSGYWKAT 95 
                          68***********************96667778**************9546666667888****************************** PP

                  NAM  87 gkdkevlskkgelvglkktLvfykgrapkgektdWvmheyr 127
                          g+  +v+sk+++ +g+kkt+vfy+g+ap+g kt+W m+ey+
  GSBRNA2T00080395001  96 GSPGPVFSKDNRMIGVKKTMVFYTGKAPTGGKTKWKMNEYK 136
                          ****************************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.48E-464162IPR003441NAC domain
PROSITE profilePS5100546.5675162IPR003441NAC domain
PfamPF023659.4E-237136IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    Send to blast
MEEDLTTGFR FYPTEDELVV FYLRNQLEGR SGDSMHRVIP VLDVFEVEPS HLPDLAGERC  60
RGDAEQWFFF VPRQEREARG GRPSRTTGSG YWKATGSPGP VFSKDNRMIG VKKTMVFYTG  120
KAPTGGKTKW KMNEYKALDD RDNVSTIPKL RHEFSLCRVY ITSGSSRAFD RRPVGVLQTG  180
IMLTNDAAVA ETSFIVGTSP EISMSGGEHV DLSVDTDMVD GLTEPIWEWE QLNWP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A6e-33516717170NO APICAL MERISTEM PROTEIN
1ut4_B6e-33516717170NO APICAL MERISTEM PROTEIN
1ut7_A6e-33516717170NO APICAL MERISTEM PROTEIN
1ut7_B6e-33516717170NO APICAL MERISTEM PROTEIN
3swm_A6e-33516720173NAC domain-containing protein 19
3swm_B6e-33516720173NAC domain-containing protein 19
3swm_C6e-33516720173NAC domain-containing protein 19
3swm_D6e-33516720173NAC domain-containing protein 19
3swp_A6e-33516720173NAC domain-containing protein 19
3swp_B6e-33516720173NAC domain-containing protein 19
3swp_C6e-33516720173NAC domain-containing protein 19
3swp_D6e-33516720173NAC domain-containing protein 19
4dul_A6e-33516717170NAC domain-containing protein 19
4dul_B6e-33516717170NAC domain-containing protein 19
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00080395001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013627314.11e-175PREDICTED: NAC domain-containing protein 90-like
RefseqXP_013680562.11e-175NAC domain-containing protein 90
SwissprotQ9FMR31e-144NAC90_ARATH; NAC domain-containing protein 90
TrEMBLA0A078JT761e-174A0A078JT76_BRANA; BnaCnng60710D protein
TrEMBLA0A0D3B2A71e-174A0A0D3B2A7_BRAOL; Uncharacterized protein
TrEMBLA0A3P6ACP51e-174A0A3P6ACP5_BRAOL; Uncharacterized protein
STRINGBo3g016870.11e-174(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM14452893
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22380.11e-135NAC domain containing protein 90
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]