PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00080204001
Common NameGSBRNA2T00080204001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family TALE
Protein Properties Length: 569aa    MW: 64191 Da    PI: 6.8549
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00080204001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox24.54.5e-083734101954
                          HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
             Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                          Fe   ++yps  ++  LA++ gL+ +qV++WF N R +
  GSBRNA2T00080204001 373 FEHflHPYPSDVDKHILARQSGLSRSQVSNWFINARVR 410
                          554459******************************88 PP
2BELL99.62.4e-32233302372
                 BELL   3 qelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                          + lqk+kakLl +lee+++rY +y+eq++   ++Fea++g+g+a++Yt+lA++a+SrhFrcLkd +++qi
  GSBRNA2T00080204001 233 KHLQKRKAKLLAMLEELKRRYGHYREQMRLATAAFEAAVGVGAAEMYTALASRAMSRHFRCLKDGLVGQI 302
                          679*****************************************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005749.2E-51177300IPR006563POX domain
PfamPF075263.2E-36183298IPR006563POX domain
PROSITE profilePS5007111.726351414IPR001356Homeobox domain
SMARTSM003895.5E-8354418IPR001356Homeobox domain
CDDcd000865.47E-10354415No hitNo description
SuperFamilySSF466891.8E-16355421IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.9E-26357421IPR009057Homeodomain-like
PfamPF059208.3E-17371410IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048481Biological Processplant ovule development
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0009506Cellular Componentplasmodesma
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 569 aa     Download sequence    Send to blast
MASDQFHGHN HHQQHQHQMI NQIHGFDERS NNPTDHQQHH YNHQIFGSNS NMGMMIDFSR  60
HHQTEITSGM DHHHYHHQTS GGTVQNQLLE DSSSSMRLCN VNNNFSSEVN DERPTQRPSQ  120
GLSLSLSSSN PTSISLQSFD LRHQQQGYSG KSTDHQNLPH SQMMVLMNSH HQNNSSNHHQ  180
FQIGSSKYLS AAQELLSEFC SLGVKESKQQ EDWDASNNNN DQHDQSATTS AKKHLQKRKA  240
KLLAMLEELK RRYGHYREQM RLATAAFEAA VGVGAAEMYT ALASRAMSRH FRCLKDGLVG  300
QIQAMSQALG ERDEDNRGVS IAARGETPRL RLLDQALRQQ KSYRQMSLVE AHPWRPQRGL  360
PERAVTALRA WLFEHFLHPY PSDVDKHILA RQSGLSRSQV SNWFINARVR LWKPMIEEMY  420
CEETRGEEEQ QMEITNPMFM DTKPDPNQIM RVEPESLSSV VTKTGHKDNS NLGTASFGST  480
FDFSLYSNQA VTYTGEGGAR EVSLTLGLQN GGVSLALSPV TAQGGPLYYG RDHMDGSVQY  540
TSSILDDDQA QNLPYMNLMG AQSLHDMV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A6e-15360418563Homeobox protein Meis2
3k2a_B6e-15360418563Homeobox protein Meis2
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.56621e-177root| seed
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Early expression is detected in the inflorescence apex of developing flowers and also in the ovule primordium and the integuments. {ECO:0000269|PubMed:8521490}.
UniprotTISSUE SPECIFICITY: Expressed in both floral and vegetative tissues. {ECO:0000269|PubMed:8521490}.
Functional Description ? help Back to Top
Source Description
UniProtPlays a major role in ovule patterning and in determination of integument identity via its interaction with MADS-box factors. Formation of complex with AG-SEP dimers negatively regulates the carpel identity process and favors the maintenance of ovule identity. BEL1-STM complex maintains the indeterminacy of the inflorescence meristem. Required, with SPL, for cytokinin-induced PIN1 expression in ovules (PubMed:22786869). {ECO:0000269|PubMed:12244239, ECO:0000269|PubMed:17693535, ECO:0000269|PubMed:22786869}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00080204001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3528660.0AK352866.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-17-O06.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013637027.10.0PREDICTED: homeobox protein BEL1 homolog
SwissprotQ388970.0BEL1_ARATH; Homeobox protein BEL1 homolog
TrEMBLA0A078I3Q30.0A0A078I3Q3_BRANA; BnaCnng11290D protein
STRINGBo4g142080.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM58662639
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41410.10.0TALE family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  2. Yamada T,Sasaki Y,Hashimoto K,Nakajima K,Gasser CS
    CORONA, PHABULOSA and PHAVOLUTA collaborate with BELL1 to confine WUSCHEL expression to the nucellus in Arabidopsis ovules.
    Development, 2016. 143(3): p. 422-6
    [PMID:26700684]
  3. Lozano-Sotomayor P, et al.
    Altered expression of the bZIP transcription factor DRINK ME affects growth and reproductive development in Arabidopsis thaliana.
    Plant J., 2016. 88(3): p. 437-451
    [PMID:27402171]