PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00080098001 | ||||||||
Common Name | GSBRNA2T00080098001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | MYB | ||||||||
Protein Properties | Length: 262aa MW: 30414.6 Da PI: 10.1483 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 48.8 | 1.7e-15 | 23 | 69 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg W Ed +l ++v+++G+ +W+ Ia++m+ +Rt+k+c++rw++ GSBRNA2T00080098001 23 RGHWRVSEDSQLMELVALYGPQNWNHIAEKMQGRRTGKSCRLRWFNQ 69 899*****************************9***********996 PP | |||||||
2 | Myb_DNA-binding | 50.1 | 6.2e-16 | 77 | 120 | 2 | 47 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++ eE+e+l+ a++ +G++ W+ Ia+ ++ gRt++ +k++w+ + GSBRNA2T00080098001 77 REFSVEEEERLLAAHRAFGNK-WAMIAKLFN-GRTDNALKNHWHVL 120 5799*****************.*********.***********987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 16.579 | 18 | 70 | IPR017930 | Myb domain |
SMART | SM00717 | 2.1E-12 | 22 | 72 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.2E-15 | 23 | 69 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 4.59E-26 | 23 | 117 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.1E-22 | 24 | 77 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 4.53E-10 | 26 | 68 | No hit | No description |
PROSITE profile | PS51294 | 24.982 | 71 | 125 | IPR017930 | Myb domain |
SMART | SM00717 | 1.4E-13 | 75 | 123 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.4E-12 | 77 | 120 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 7.6E-20 | 78 | 125 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.35E-9 | 78 | 121 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 262 aa Download sequence Send to blast |
MLKESDGFKK KKKQRGSSRF CSRGHWRVSE DSQLMELVAL YGPQNWNHIA EKMQGRRTGK 60 SCRLRWFNQL DPRINKREFS VEEEERLLAA HRAFGNKWAM IAKLFNGRTD NALKNHWHVL 120 MARKLRQQST SYLRRFNESS YNPTSDHKTF TLPPGLYDGE DMNLVKKSWK TLKEEYTTNL 180 KAQYLQEEYC SLRMPMQGPH HHCSTFPADS LALTLHVSIQ EPSLSSSSCA EHRVVARYFE 240 TTKPPAFIDF LGVGHHQSPK I* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 4e-28 | 23 | 125 | 4 | 105 | MYB PROTO-ONCOGENE PROTEIN |
1mse_C | 4e-28 | 23 | 125 | 4 | 105 | C-Myb DNA-Binding Domain |
1msf_C | 4e-28 | 23 | 125 | 4 | 105 | C-Myb DNA-Binding Domain |
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Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in organ boundaries. {ECO:0000269|PubMed:19542355}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that involved in boundary specification, meristem initiation and maintenance, and organ patterning. Functions in both lateral organ separation and axillary meristem formation. {ECO:0000269|PubMed:19542355}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00080098001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013665076.1 | 0.0 | transcription factor MYB105-like | ||||
Swissprot | Q9SEZ4 | 2e-60 | MY105_ARATH; Transcription factor MYB105 | ||||
TrEMBL | A0A078I0K5 | 0.0 | A0A078I0K5_BRANA; BnaA02g29620D protein | ||||
STRING | Bra033078.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6300 | 18 | 46 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G29020.2 | 1e-133 | myb domain protein 110 |
Publications ? help Back to Top | |||
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