PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00079836001 | ||||||||
Common Name | GSBRNA2T00079836001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | ERF | ||||||||
Protein Properties | Length: 226aa MW: 25090 Da PI: 7.3455 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 60.4 | 4.3e-19 | 115 | 165 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+++AeIrdp +ng +r++lg+f tae+Aa a+++a+ +++g GSBRNA2T00079836001 115 HYRGVRQRP-WGKFAAEIRDPAKNG--ARVWLGTFETAEDAAFAYDRAAFRMRG 165 8********.***********9987..*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 5.72E-31 | 114 | 173 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 3.5E-32 | 114 | 173 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 7.4E-40 | 115 | 179 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 24.171 | 115 | 173 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.1E-12 | 115 | 165 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.96E-23 | 115 | 175 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 7.4E-11 | 116 | 127 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 7.4E-11 | 139 | 155 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0001944 | Biological Process | vasculature development | ||||
GO:0009864 | Biological Process | induced systemic resistance, jasmonic acid mediated signaling pathway | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0051301 | Biological Process | cell division | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 226 aa Download sequence Send to blast |
MMYGQSEVES DYALLESIRR HLLGGEAELR FAESIPSSCF TESWGDLPLK ENDSEDMLVY 60 GLLNDPYDTS SPSSDLSCIT EFRPSDSPVA KAEPAESFAA ATVEKQKAAT AKGKHYRGVR 120 QRPWGKFAAE IRDPAKNGAR VWLGTFETAE DAAFAYDRAA FRMRGSRALL NFPLRVNSGE 180 PDPVRITSKR SYTSSSSSSS ENRKLKRRRK TENVPSEFQV KCEVV* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 1e-44 | 111 | 180 | 1 | 70 | ATERF1 |
3gcc_A | 1e-44 | 111 | 180 | 1 | 70 | ATERF1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 201 | 208 | NRKLKRRR |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Bna.8489 | 3e-83 | leaf| seed| stem |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Involved in disease resistance pathways. {ECO:0000269|PubMed:10715325, ECO:0000269|PubMed:12805630, ECO:0000269|PubMed:9756931}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00548 | DAP | Transfer from AT5G47220 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00079836001 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by jasmonate (JA) and Alternaria brassicicola (locally and systemically). Ethylene induction is completely dependent on a functional ETHYLENE-INSENSITIVE2 (EIN2) while wounding induction does not require EIN2. Transcripts accumulate strongly in cycloheximide-treated plants, a protein synthesis inhibitor. Seems to not be influenced by exogenous abscisic acid (ABA), cold, heat, NaCl or drought stress. {ECO:0000269|PubMed:10715325, ECO:0000269|PubMed:12805630}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC183495 | 0.0 | AC183495.1 Brassica oleracea Contig A, complete sequence. | |||
GenBank | FJ788943 | 0.0 | FJ788943.1 Brassica carinata ERF2 transcription factor (ERF2.3) mRNA, complete cds. | |||
GenBank | FJ788948 | 0.0 | FJ788948.1 Brassica napus ERF2 transcription factor (ERF2.1) mRNA, complete cds. | |||
GenBank | FJ788949 | 0.0 | FJ788949.1 Brassica carinata ERF2 transcription factor (ERF2.1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013616238.1 | 1e-158 | PREDICTED: ethylene-responsive transcription factor 2-like | ||||
Swissprot | O80338 | 1e-108 | EF101_ARATH; Ethylene-responsive transcription factor 2 | ||||
TrEMBL | A0A078JTP9 | 1e-164 | A0A078JTP9_BRANA; BnaCnng60520D protein | ||||
STRING | Bo2g132270.1 | 1e-158 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10 | 28 | 1650 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G47220.1 | 2e-81 | ethylene responsive element binding factor 2 |
Publications ? help Back to Top | |||
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