PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00079521001 | ||||||||
Common Name | GSBRNA2T00079521001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 266aa MW: 30182.7 Da PI: 6.1519 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 58.2 | 1.4e-18 | 78 | 131 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k+++++ eq+++Le+ Fe ++++ e++ +LA+ lgL+ rq+ +WFqNrRa++k GSBRNA2T00079521001 78 KKRRLNMEQVKTLEKNFELGNKLDPERKMQLARALGLQPRQIAIWFQNRRARWK 131 456899***********************************************9 PP | |||||||
2 | HD-ZIP_I/II | 131.1 | 4.3e-42 | 77 | 169 | 1 | 93 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 ekkrrl+ eqvk+LE++Fe +kL+perK++lar+Lglqprq+a+WFqnrRAR+ktkqlEkdy++Lkr++d+lk+en+ L++++++L++e GSBRNA2T00079521001 77 EKKRRLNMEQVKTLEKNFELGNKLDPERKMQLARALGLQPRQIAIWFQNRRARWKTKQLEKDYDTLKRQFDSLKAENDLLQTHNQKLQAE 166 69**************************************************************************************99 PP HD-ZIP_I/II 91 lke 93 +++ GSBRNA2T00079521001 167 ITS 169 975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 8.55E-20 | 69 | 135 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.313 | 73 | 133 | IPR001356 | Homeobox domain |
SMART | SM00389 | 9.9E-19 | 76 | 137 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 6.0E-16 | 78 | 131 | IPR001356 | Homeobox domain |
CDD | cd00086 | 2.97E-16 | 78 | 134 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 9.5E-20 | 80 | 140 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 1.0E-5 | 104 | 113 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 108 | 131 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 1.0E-5 | 113 | 129 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 6.5E-16 | 133 | 174 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 266 aa Download sequence Send to blast |
MSCNNGMSFF PSNFMIQTSY EDLPPSLSPL LPSCSIPQDL HGFASFLGKR SPIEGLEAEN 60 IMNREEDYSD DGSQMGEKKR RLNMEQVKTL EKNFELGNKL DPERKMQLAR ALGLQPRQIA 120 IWFQNRRARW KTKQLEKDYD TLKRQFDSLK AENDLLQTHN QKLQAEITSL RNREQTESIN 180 LNKETEGSCS NRSDNSSDNF RLDISTAVPS VDSTITGGHP PVPQTVGRHF FPPATATTTT 240 TTMQFFQNSS SGQSMVKEEN SISNMF |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 125 | 133 | RRARWKTKQ |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Predominantly expressed in leaves and flowers. {ECO:0000269|PubMed:16055682}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that may act in the sucrose-signaling pathway. {ECO:0000269|PubMed:11292072}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00079521001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK353311 | 0.0 | AK353311.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-34-O11. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013618241.1 | 1e-173 | PREDICTED: homeobox-leucine zipper protein ATHB-13-like | ||||
Swissprot | Q8LC03 | 1e-170 | ATB13_ARATH; Homeobox-leucine zipper protein ATHB-13 | ||||
TrEMBL | A0A078I2S1 | 0.0 | A0A078I2S1_BRANA; BnaA02g14550D protein (Fragment) | ||||
STRING | Bo2g064570.1 | 1e-172 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2633 | 27 | 70 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69780.1 | 1e-151 | HD-ZIP family protein |
Publications ? help Back to Top | |||
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