PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00079220001
Common NameGSBRNA2T00079220001, LOC106375600
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family WRKY
Protein Properties Length: 207aa    MW: 23294.5 Da    PI: 5.9503
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00079220001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY86.62.1e-27113171159
                          ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                          +dDgy+WrKYG+K+vk++++ r+YY+C+ +gC+vkk+ver+ ed  +v++tY g Hnhe
  GSBRNA2T00079220001 113 MDDGYKWRKYGKKSVKNNTNKRNYYKCSNEGCTVKKRVERDGEDAAYVITTYDGVHNHE 171
                          59********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.5E-30100173IPR003657WRKY domain
SuperFamilySSF1182906.41E-26105173IPR003657WRKY domain
PROSITE profilePS5081128.759108173IPR003657WRKY domain
SMARTSM007741.8E-30113172IPR003657WRKY domain
PfamPF031061.3E-21114171IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 207 aa     Download sequence    Send to blast
MNISQNPSPN FPFFSDENFI NPFMDNFDFT DLIFDVNEGG NNNGFIQEET SSPISIVSSE  60
TFTGESGGSG SGITTSSKKE PTFGCKSRGS KDGETKEMGH RVAFRTRSKI DVMDDGYKWR  120
KYGKKSVKNN TNKRNYYKCS NEGCTVKKRV ERDGEDAAYV ITTYDGVHNH ESPSHVYYND  180
MVLSYDHDNR NQHSLLEAIQ QISPPY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A6e-23103174778Probable WRKY transcription factor 4
2lex_A6e-23103174778Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). Involved in defense responses. May act as positive regulator of salicylic acid (SA)-mediated signaling and negative regulator of jasmonic acid (JA)-mediated signaling (PubMed:21030507). {ECO:0000250, ECO:0000269|PubMed:21030507}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00079220001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF4300601e-125KF430060.1 Brassica rapa WRKY transcription factor 51 (WRKY51) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013671006.11e-153probable WRKY transcription factor 51 isoform X1
SwissprotQ93WU91e-108WRK51_ARATH; Probable WRKY transcription factor 51
TrEMBLA0A078FNS41e-152A0A078FNS4_BRANA; BnaC03g49470D protein
TrEMBLA0A3P6AMM81e-152A0A3P6AMM8_BRAOL; Uncharacterized protein
STRINGBra024328.1-P1e-149(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM57112747
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64810.18e-97WRKY DNA-binding protein 51
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  2. Yan C, et al.
    Injury Activates Ca2+/Calmodulin-Dependent Phosphorylation of JAV1-JAZ8-WRKY51 Complex for Jasmonate Biosynthesis.
    Mol. Cell, 2018. 70(1): p. 136-149.e7
    [PMID:29625034]