PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00079177001
Common NameGSBRNA2T00079177001, LOC106427708
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB
Protein Properties Length: 298aa    MW: 33351.8 Da    PI: 6.5266
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00079177001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding29.22.1e-092873346
                         SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHH CS
      Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqk 46
                         +WT eE +++ +a + + ++   +W+++a++++ g+t  +++  ++ 
  GSBRNA2T00079177001 28 KWTHEENKKFENALAFYDKDtpdRWNKVAAMLP-GKTVGDVIKQYRE 73
                         8********************************.******9999986 PP
2Myb_DNA-binding48.61.9e-15140184347
                          SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                          +WT+eE+ +++ + k++G+g+W+ Iar + ++Rt+ q+ s+ qky
  GSBRNA2T00079177001 140 PWTEEEHRQFLMGLKKYGKGDWRNIARNFVTTRTPTQVASHAQKY 184
                          8*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.608.4E-52374IPR009057Homeodomain-like
PROSITE profilePS512939.22477IPR017884SANT domain
SMARTSM007173.5E-102577IPR001005SANT/Myb domain
SuperFamilySSF466891.05E-112779IPR009057Homeodomain-like
CDDcd001671.00E-72874No hitNo description
PfamPF002496.2E-82873IPR001005SANT/Myb domain
PROSITE profilePS5129421.845133189IPR017930Myb domain
SuperFamilySSF466891.66E-17135188IPR009057Homeodomain-like
TIGRFAMsTIGR015577.5E-18136188IPR006447Myb domain, plants
SMARTSM007178.7E-14137187IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.7E-13137184IPR009057Homeodomain-like
CDDcd001673.31E-11140185No hitNo description
PfamPF002497.7E-13140184IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    Send to blast
MNRRIEVLSS ATYLDTSNWL FQENRGTKWT HEENKKFENA LAFYDKDTPD RWNKVAAMLP  60
GKTVGDVIKQ YRELEEDLSD IEAGRIPIPG YASDSFTLDW GGYDAGNNGF NMNGYYFPAS  120
GGKRGSAARA AEHERKKGVP WTEEEHRQFL MGLKKYGKGD WRNIARNFVT TRTPTQVASH  180
AQKYFIRQVN GGKDKRRSSI HDITTVNISD SPDAAAADSA TANAPCSPPS VGGSQREASD  240
HWEGQTTYVE TAAAFYNQNV FQETLLGMSS TPYMAKLQEQ SFLNASQFES YNAYLQM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A2e-162691873RADIALIS
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.68661e-173root| seed
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Detected in the apical inflorescence meristem, in bract primordia arising in its periphery and in floral meristems produced in the axils of bracts (stages 0-3). From stage 3 to stage 8, detected in all floral organs irrespective of their dorsoventral positions. From stage 9, barely detectable in bracts, sepals, and stamens. In the corolla, however, expression was maintained and enhanced in some regions. Within ventral and lateral petals at stage 9, asymmetric pattern of expression with high levels of transcripts in the inner epidermis of the furrow and very reduced levels in the remaining cell layers. In the dorsal petals, from stage 9 onward, detected but with a more even distribution across cell layers than in the ventral petal. {ECO:0000269|PubMed:11937495}.
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00079177001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1181350.0AK118135.1 Arabidopsis thaliana At2g38090 mRNA for putative MYB family transcription factor, complete cds, clone: RAFL19-43-J04.
GenBankAY5195290.0AY519529.1 Arabidopsis thaliana MYB transcription factor (At2g38090) mRNA, complete cds.
GenBankBT0061220.0BT006122.1 Arabidopsis thaliana clone U50930 putative MYB family transcription factor (At2g38090) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013723880.10.0transcription factor DIVARICATA
SwissprotQ8S9H75e-94DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLA0A078FJ690.0A0A078FJ69_BRANA; BnaC03g21050D protein
TrEMBLA0A3P6AZ910.0A0A3P6AZ91_BRAOL; Uncharacterized protein
STRINGBo3g032160.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM122827100
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38090.11e-172MYB family protein
Publications ? help Back to Top
  1. Galego L,Almeida J
    Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers.
    Genes Dev., 2002. 16(7): p. 880-91
    [PMID:11937495]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  3. Almeida J,Rocheta M,Galego L
    Genetic control of flower shape in Antirrhinum majus.
    Development, 1997. 124(7): p. 1387-92
    [PMID:9118809]