PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00078837001
Common NameGSBRNA2T00078837001, LOC106361209
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ERF
Protein Properties Length: 277aa    MW: 31594.3 Da    PI: 7.1962
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00078837001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.67.2e-19132182256
                  AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                           y+GVr++  +g+WvAeIr p++   r+r +lg+f+taeeAa a+++ + kl+g+
  GSBRNA2T00078837001 132 LYRGVRQRQ-WGKWVAEIRKPKS---RARLWLGTFDTAEEAAMAYDRQAFKLRGH 182
                          59****999.**********954...4**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000187.16E-35131191No hitNo description
PROSITE profilePS5103223.644132189IPR001471AP2/ERF domain
SMARTSM003806.3E-38132195IPR001471AP2/ERF domain
SuperFamilySSF541716.02E-23132190IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.104.2E-32132191IPR001471AP2/ERF domain
PfamPF008472.5E-13133182IPR001471AP2/ERF domain
PRINTSPR003672.5E-11133144IPR001471AP2/ERF domain
PRINTSPR003672.5E-11155171IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 277 aa     Download sequence    Send to blast
MDFDDELNLC TTKGKNIDPS CGEGSSTTSP RSMKKMRNLD HRPKPYFSFS SSNSLGAFPF  60
HLDPTFQNPQ LGYVPVNQQH DQKQMISFSP QQPQHQYMFK YWSDTLNLSP RGRRMMMMNQ  120
ESIVQPYSAT KLYRGVRQRQ WGKWVAEIRK PKSRARLWLG TFDTAEEAAM AYDRQAFKLR  180
GHNATLNFPE HYVNKEAEVH DPSSLDQKQT ETQQLKEVNL EGKEVAVSDG GLEEGMAEAW  240
FNAVTAGWGP ESPLWDDLNS SQFSQSSSSC PMKPFF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A7e-22131189160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13343KKMRNLDHRPK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.211160.0flower| leaf
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00458DAPTransfer from AT4G28140Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00078837001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1894411e-108AC189441.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB069M23, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013656381.10.0ethylene-responsive transcription factor ERF054
SwissprotQ9M0J31e-135ERF54_ARATH; Ethylene-responsive transcription factor ERF054
TrEMBLA0A078FIJ30.0A0A078FIJ3_BRANA; BnaA08g13860D protein
STRINGBra010383.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM21412775
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28140.11e-136ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]