PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00078811001
Common NameGSBRNA2T00078811001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family NAC
Protein Properties Length: 337aa    MW: 38668.5 Da    PI: 7.0514
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00078811001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM164.73.3e-51101411129
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleev..ikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88 
                          lppGfrFhP+deelv++yL++k+++k+l+++++  + e+d++ +ePw+Lp  +k + kewyfFs rd+ky tg r+nrat sgyWkatgk
  GSBRNA2T00078811001  10 LPPGFRFHPSDEELVCHYLCNKIRAKSLHCNDAtdLVEIDLHICEPWQLPDVAKLNAKEWYFFSFRDRKYCTGYRTNRATVSGYWKATGK 99 
                          79*************************777665469999***********87788999******************************** PP

                  NAM  89 dkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrle 129
                          d++v++  +++lvg++ktLvfy++rap+g kt+W+mhe+rle
  GSBRNA2T00078811001 100 DRTVIDPrTRQLVGMRKTLVFYRNRAPHGIKTTWIMHEFRLE 141
                          *****9967778***************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.31E-588159IPR003441NAC domain
PROSITE profilePS5100555.37210159IPR003441NAC domain
PfamPF023657.7E-2711140IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    Send to blast
MGLKDIGSTL PPGFRFHPSD EELVCHYLCN KIRAKSLHCN DATDLVEIDL HICEPWQLPD  60
VAKLNAKEWY FFSFRDRKYC TGYRTNRATV SGYWKATGKD RTVIDPRTRQ LVGMRKTLVF  120
YRNRAPHGIK TTWIMHEFRL ECPNMLPKED WVLCRVFNKG RDLSLQDNNN DHLTRRFAVN  180
GAPDLNYAPN YNNQLHPLLS SSPSTTIDPL HHLDQWGQLM KQPSRTTDHP YHHHCKHQTI  240
ACGWEQMMGS MSSSSTHGHD HESLLNLLYA DNNNNINVTD DQYIQNYEKI LFPSDSTSLD  300
HDKICMGTSS DGGMVSNPRM ECGGLSFETD NPLSFH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A6e-481015915168Stress-induced transcription factor NAC1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00078811001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF7382740.0KF738274.1 Brassica napus NAC transcription factor 74-2 (NAC74-2.1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013675868.10.0NAC domain-containing protein 21/22-like
TrEMBLA0A078FM930.0A0A078FM93_BRANA; BnaA08g13670D protein
STRINGBra010362.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM34362862
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28530.11e-155NAC domain containing protein 74
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]