PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00078758001
Common NameGSBRNA2T00078758001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family HB-PHD
Protein Properties Length: 832aa    MW: 94123.3 Da    PI: 4.419
Description HB-PHD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00078758001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox32.51.5e-104615041053
                          HHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHH CS
             Homeobox  10 eqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRa 53 
                            +e L ++F++n  ps++ r  L+k+l+L+ ++V+ WF+N R+
  GSBRNA2T00078758001 461 AAVEKLRQVFAENELPSKSVRDSLSKELSLDPEKVSKWFKNTRY 504
                          67899*************************************97 PP
2PHD414.4e-14189243150
                          SBTTTSS..TCTTSSEEEBS.SSSSEEETTTSTSSSSHHSHHSS..TBSSHHHHT CS
                  PHD   1 rCkvCgk..sdeegelvlCd.gCkewfHlkClglkleseekpeg..ewlCeeCke 50 
                          +C+ C++  +  +++++lCd +C+++fH+kCl+++le+e++p g   w+C+ C++
  GSBRNA2T00078758001 189 FCAECNSreASLDNDIILCDgTCNRAFHQKCLDPPLETESIPPGdqGWFCKICDC 243
                          6999**965555********56********************9999*******97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF579032.26E-13181245IPR011011Zinc finger, FYVE/PHD-type
Gene3DG3DSA:3.30.40.105.5E-12185242IPR013083Zinc finger, RING/FYVE/PHD-type
PROSITE profilePS5001611.03187244IPR019787Zinc finger, PHD-finger
PfamPF006283.1E-11189243IPR019787Zinc finger, PHD-finger
SMARTSM002496.5E-10189242IPR001965Zinc finger, PHD-type
CDDcd155042.58E-31189241No hitNo description
PROSITE patternPS013590190241IPR019786Zinc finger, PHD-type, conserved site
Gene3DG3DSA:1.10.10.604.4E-12437503IPR009057Homeodomain-like
PROSITE profilePS5007112.617449509IPR001356Homeobox domain
SuperFamilySSF466894.06E-10449513IPR009057Homeodomain-like
SMARTSM003899.8E-11451513IPR001356Homeobox domain
CDDcd000867.44E-8452504No hitNo description
PfamPF000465.3E-8461504IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009733Biological Processresponse to auxin
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 832 aa     Download sequence    Send to blast
MGESETKGKV KKETEKACVS VERVESTLLS SLVKKKGKET TSKRKYNKRK TEEEICSKSS  60
NKKYSRGLEE EEDEGKKTRK RKSKRQQKDS NKVEEVDEAL RLQRRTRYLL IKMKMQQNLI  120
DAYAAEGWKG QSREKIRPDK ELERARKHIL DCKLGLRDAI RQLEHLSSVG RMEEKVMAPD  180
GSIHHDHIFC AECNSREASL DNDIILCDGT CNRAFHQKCL DPPLETESIP PGDQGWFCKI  240
CDCRIEIIDT MNAQIGTQYP VDSNWQDIFN EEANLPVGSE ATLNKEADWP SDDSEDGDYD  300
PEMKEISNSR SDSDGGGGGG GGGGGSSSTS VSLASDGVAL STGSWEGHGF GNAVESGEAS  360
NEETVHGPRQ RKTVDYTKLY HEMFGKDAVL QEQGSEDEDW GPSDRRKRRK ESDAASTVVT  420
MCENSKRDED VVEEVQEQNE RDSVSVGGKG GRRPIFRIPR AAVEKLRQVF AENELPSKSV  480
RDSLSKELSL DPEKVSKWFK NTRYMALRNR KAESVKQPEE SKVFLSGDSG PEAAMEKNTE  540
ADESHDNMEE IVMEKNTETN EIQETDDETV METNTDTNQI QETMEETVME KKTESNVIQE  600
TMDEAVMEKN TEANETQDTM DEAVMEERTE ANEIQQETME ETFMEKTTEA HEVQDSMDDE  660
TNTETNEIQE TVDEAVLETN TETNEVQNTI DKSVPLKFND PTNQTTVSPC HNDNQEETQH  720
ANESFPTPIE DENQQYLEQN DSSLTLPPHE EVSSEMSLET SLEDKERKEV EEFEAVMEML  780
CRAENKLLNV TQRLERFRTP KGRKKLGKSS SCLHEEDSVV YVPTPEIKEG R*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17782TRKRKS
2405410RKRRKE
Functional Description ? help Back to Top
Source Description
UniProtSpecifically binds to the fungal elicitor-responsive DNA element, 5'-CTAATTGTTTA-3', of the gene PR2 promoter.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00078758001
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By pathogen infection.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013656318.10.0pathogenesis-related homeodomain protein-like
SwissprotP487850.0PRH_ARATH; Pathogenesis-related homeodomain protein
TrEMBLA0A078FM680.0A0A078FM68_BRANA; BnaA08g13270D protein
STRINGBra010310.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM86992738
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29940.10.0pathogenesis related homeodomain protein A
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]