PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00078555001

Common Name

GSBRNA2T00078555001, LOC106379142

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

NAC

Protein Properties

Length: 316aa MW: 35900.6 Da PI: 8.9827

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00078555001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	182.7	8.7e-57	17	142	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 lppGfrFhPtdeel+++yL++kv + ++++ ++i evd++k+ePw+Lp k+k +ekewyfF+ rd+ky+tg r+nrat++gyWkatgkdk GSBRNA2T00078555001 17 LPPGFRFHPTDEELITHYLHNKVLNIDFSA-KAIGEVDLNKAEPWELPYKAKMGEKEWYFFCVRDRKYPTGLRTNRATQAGYWKATGKDK 105 79************************99.88***********99999********************************* PP NAM 91 evlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 e+++ +++lvg+kktLvfy+grapkg+kt+Wvmheyrl GSBRNA2T00078555001 106 EIFR-GKSLVGMKKTLVFYRGRAPKGQKTNWVMHEYRL 142 .999**************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	4.45E-65	13	167	IPR003441	NAC domain
PROSITE profile	PS51005	59.927	17	167	IPR003441	NAC domain
Pfam	PF02365	5.1E-30	18	142	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 316 aa Download sequence Send to blast
METFGGFHKE DDEQMVLPPG FRFHPTDEEL ITHYLHNKVL NIDFSAKAIG EVDLNKAEPW 60 ELPYKAKMGE KEWYFFCVRD RKYPTGLRTN RATQAGYWKA TGKDKEIFRG KSLVGMKKTL 120 VFYRGRAPKG QKTNWVMHEY RLDGKLSPHN LPKTAKNEWV ICRVFHKTAG GKKIPISTLM 180 QIGSYGGCSL PPLTDSSPYN NDKTKNEPTY VPCFSNQTET RGTLLNYFSN NPALSSIPLY 240 QPHSLHVSDP VLAQEQSVSQ GMFENNRRQS FKTLSISQET GVSNTDIEFG RKAFDHQEVP 300 SSSTGPVDLE PFWSY*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-57	14	173	14	171	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-57	14	173	14	171	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-57	14	173	14	171	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-57	14	173	14	171	NO APICAL MERISTEM PROTEIN
3swm_A	2e-57	14	173	17	174	NAC domain-containing protein 19
3swm_B	2e-57	14	173	17	174	NAC domain-containing protein 19
3swm_C	2e-57	14	173	17	174	NAC domain-containing protein 19
3swm_D	2e-57	14	173	17	174	NAC domain-containing protein 19
3swp_A	2e-57	14	173	17	174	NAC domain-containing protein 19
3swp_B	2e-57	14	173	17	174	NAC domain-containing protein 19
3swp_C	2e-57	14	173	17	174	NAC domain-containing protein 19
3swp_D	2e-57	14	173	17	174	NAC domain-containing protein 19
4dul_A	2e-57	14	173	14	171	NAC domain-containing protein 19
4dul_B	2e-57	14	173	14	171	NAC domain-containing protein 19
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Bna.27191	0.0	seed

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed at low levels in leaves. {ECO:0000269\|PubMed:17098808}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00496	DAP	Transfer from AT5G07680	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00078555001

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed post-transcriptionally by miR164. {ECO:0000269\|PubMed:15294871, ECO:0000269\|PubMed:17098808, ECO:0000269\|PubMed:18305205, ECO:0000305\|PubMed:15723790}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KC966757	0.0	KC966757.1 Brassica napus NAC transcription factor 79 (NAC79.1) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013674610.1	0.0	NAC domain-containing protein 79
Swissprot	Q9FLR3	0.0	NAC79_ARATH; NAC domain-containing protein 79
TrEMBL	A0A078FHY6	0.0	A0A078FHY6_BRANA; BnaC02g01470D protein
STRING	Bo2g008760.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM400	28	174

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G07680.1	0.0	NAC domain containing protein 80

Link Out ? help Back to Top
Entrez Gene	106379142

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Vidal EA,Álvarez JM,Gutiérrez RA Nitrate regulation of AFB3 and NAC4 gene expression in Arabidopsis roots depends on NRT1.1 nitrate transport function. Plant Signal Behav, 2014. 9(3): p. e28501 [PMID:24642706] Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293] Lee MH,Jeon HS,Kim HG,Park OK An Arabidopsis NAC transcription factor NAC4 promotes pathogen-induced cell death under negative regulation by microRNA164. New Phytol., 2017. 214(1): p. 343-360 [PMID:28032643]