PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00078275001

Common Name

GSBRNA2T00078275001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

bZIP

Protein Properties

Length: 308aa MW: 34663.7 Da PI: 9.4641

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00078275001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	28.8	2.7e-09	178	235	5	62
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklkse 62 kr +r+ NR +A rs +R ++i++Le kv++L+ e ++L l l+ l+++ GSBRNA2T00078275001 178 KRVKRMLANRASAARSKERETQYIAKLEHKVQTLQIETTTLSAHLTYLQRDNMGLQNQ 235 999***************************************9998888776666555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	5.7E-13	174	238	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.174	176	239	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	4.8E-8	178	236	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	1.1E-10	178	235	No hit	No description
SuperFamily	SSF57959	3.21E-10	178	234	No hit	No description
CDD	cd14703	4.05E-18	179	230	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 308 aa Download sequence Send to blast
MYHSPSRVVA GGSGNLPPRN SHRRSNSDHT FVFSSMSPPL IPSKSLERSV SSCGEASDWS 60 KLVKEEERRT FSEGYDDALR AYMRLDKLDA ERSRGRTRKM TNGGSTGGDS EGESNVKRRA 120 GGDIAPTSGH YRSVSLDSCC FREDDYSVRF GKYEFSAGDM KKIAADETLA GIVMADPKRV 180 KRMLANRASA ARSKERETQY IAKLEHKVQT LQIETTTLSA HLTYLQRDNM GLQNQNNELK 240 FRLQSMEQQT QLRNALSEKL TEEFQRLSLV IGVPNRSESN ISNASLTPEM FQQQLRISQL 300 QHQHYNE*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00078275001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC189480	0.0	AC189480.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB082F21, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013660136.1	0.0	probable transcription factor PosF21
TrEMBL	A0A078FHB8	0.0	A0A078FHB8_BRANA; BnaA09g43320D protein
STRING	Bra031172.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM20354	5	6

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G21230.1	1e-101	bZIP family protein

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]