PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00078273001

Common Name

GSBRNA2T00078273001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

bZIP

Protein Properties

Length: 388aa MW: 43503.9 Da PI: 9.2248

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00078273001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	23.3	1.4e-07	258	298	5	45
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL 45 k ++r +NR AArrs qR + i +Leek ++Le+e +L GSBRNA2T00078273001 258 KYAKRTLSNRAAARRSVQRTAQHILNLEEKEQTLEKEGATL 298 779**********************************8877 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	2.5E-6	254	318	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	2.1E-5	256	299	No hit	No description
SuperFamily	SSF57959	3.52E-5	258	309	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 388 aa Download sequence Send to blast
MDRQAKNVPF QTSFVLSTHC PCPPSGQNRG SMPPPRRSSL PPLPPKRPTT ARRHQQVGLQ 60 NFTGPRLLPP QSPVFRSWTP MSSPAPSSSF QYFQPAPPVA YHNAALPPRP PTTSVSARGS 120 AYSGNDSAVF PSMDAMKMIY PEPIEMPVGV NYSKEGHGEP TGFMDQQVYM DLDEIFDFST 180 KDDDVARIVS GSSENNAGVK KRAAPSRKTR RKSVSPSVDC NNNWKSSVAI EKGMFTESQM 240 NEIARSVTLQ KYVVTDPKYA KRTLSNRAAA RRSVQRTAQH ILNLEEKEQT LEKEGATLTV 300 HTRFAEKTKL GLEEENMKLR IRYQGLQDQF KRANASKECN NEEINWVKQK GKEAVFPDWG 360 DTTMDEFLLE QLNELNEEPE TKNYGFE*

Sequence ? help Back to Top

Protein Sequence Length: 388 aa Download sequence Send to blast

MDRQAKNVPF QTSFVLSTHC PCPPSGQNRG SMPPPRRSSL PPLPPKRPTT ARRHQQVGLQ  60
NFTGPRLLPP QSPVFRSWTP MSSPAPSSSF QYFQPAPPVA YHNAALPPRP PTTSVSARGS  120
AYSGNDSAVF PSMDAMKMIY PEPIEMPVGV NYSKEGHGEP TGFMDQQVYM DLDEIFDFST  180
KDDDVARIVS GSSENNAGVK KRAAPSRKTR RKSVSPSVDC NNNWKSSVAI EKGMFTESQM  240
NEIARSVTLQ KYVVTDPKYA KRTLSNRAAA RRSVQRTAQH ILNLEEKEQT LEKEGATLTV  300
HTRFAEKTKL GLEEENMKLR IRYQGLQDQF KRANASKECN NEEINWVKQK GKEAVFPDWG  360
DTTMDEFLLE QLNELNEEPE TKNYGFE*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00078273001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC189480	0.0	AC189480.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB082F21, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009117427.1	0.0	PREDICTED: uncharacterized protein LOC103842546 isoform X2
TrEMBL	A0A078FN88	0.0	A0A078FN88_BRANA; BnaA09g43300D protein
STRING	Bra031173.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM21543	3	5

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38900.3	2e-20	bZIP family protein

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]