PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00078204001
Common NameGSBRNA2T00078204001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family CAMTA
Protein Properties Length: 925aa    MW: 104488 Da    PI: 5.8703
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00078204001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-11811.4e-56201363118
                 CG-1   3 ke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseen 91 
                          +e ++rwl++ ei++iL+n++k+++++e++t+p sgs++L++rk++ryfrkDG++w+kk+dgktv+E+he+LK g+v+vl+cyYah+++n
  GSBRNA2T00078204001  20 SEaRNRWLRPPEICEILQNYQKFQISSEPPTTPASGSVFLFDRKVLRYFRKDGHNWRKKRDGKTVKEAHERLKAGSVDVLHCYYAHGHDN 109
                          4449************************************************************************************** PP

                 CG-1  92 ptfqrrcywlLeeelekivlvhylevk 118
                          ++fqrr+yw+L+eel++iv+vhylevk
  GSBRNA2T00078204001 110 ENFQRRSYWMLQEELSHIVFVHYLEVK 136
                          ************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143782.10815141IPR005559CG-1 DNA-binding domain
SMARTSM010768.0E-8318136IPR005559CG-1 DNA-binding domain
PfamPF038591.3E-4921135IPR005559CG-1 DNA-binding domain
SuperFamilySSF812961.26E-13367452IPR014756Immunoglobulin E-set
Gene3DG3DSA:1.25.40.201.1E-14521653IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029716.547524650IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484031.43E-14537653IPR020683Ankyrin repeat-containing domain
CDDcd002049.89E-11541650No hitNo description
PROSITE profilePS500889.137591623IPR002110Ankyrin repeat
SuperFamilySSF525402.5E-8741795IPR027417P-loop containing nucleoside triphosphate hydrolase
SMARTSM000150.92744766IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500968.974746772IPR000048IQ motif, EF-hand binding site
PfamPF006120.0036747765IPR000048IQ motif, EF-hand binding site
SMARTSM000150.0054767789IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500969.432768792IPR000048IQ motif, EF-hand binding site
PfamPF006126.8E-4770789IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 925 aa     Download sequence    Send to blast
MAEARRFSPN NELDVGHILS EARNRWLRPP EICEILQNYQ KFQISSEPPT TPASGSVFLF  60
DRKVLRYFRK DGHNWRKKRD GKTVKEAHER LKAGSVDVLH CYYAHGHDNE NFQRRSYWML  120
QEELSHIVFV HYLEVKGSRI STSYNRMQRT AEDSAQFSHE TGEVFTSERD GYASGSINQY  180
DHNNHPQATD SANVNGAHTP ELEDAESAYN QQGSSIVYSH QQPPSTGFDP LYQMSLTRNN  240
YHLILTNVTW YLLLFFFLSS KNYQRSWSLL PLQPNSEHEV LDQRLQDSSF TMQAPYLSTK  300
KQHLLDGALG EEGLKKVDSF SRWMSKELGD VCVIADANES FTHSSSTAYL DGYVMSPSLS  360
KEQLFSIIDF APNWTYVGCE VNVLVTGKFL KTPEEAEREE WCCMFGQTEV PADVIADGIL  420
QCVAPMREAG RVPFYITCSN RLACSEVREF EYKVLESQAF GRETDDSTES LEARFVKLLC  480
SKSDSPSSNG SDMSQVSEKI SLLLFENDDQ LDQMLMNEIS QESKKEKLLQ EALKESLHSW  540
LLQKMAEGGK GPNVLDEGGQ GILHFAAALG YNWALEPTVV AGVSVDFRDV NGWTALHWAA  600
FFGRELVIGS LIALGASPGT LTDPNPDFPS GSTPSDLAYA NGFKGIAGYL SEYALTAHVS  660
LLSLNESNAE TSESTTPSLS SSSLTDSLTA VRNATQAAAR IHQVFRAQSF QKKQMKEFGV  720
SEERALSMLA PKTHKQGRAH SDDSVQAAAI RIQNKFRGYK GRKDYLITRQ RIIRIQAHVR  780
GYQVRKNYRK IIWSVGILEK VILRWRRKGA GLRGFRSDAL VDKMQDGTER EEDDDFFKQG  840
RKQTEERLQK ALARVKSMAQ YPEARDQYRR LLNVVNDIQE SKVEKALESS EEATFFDDDL  900
IDIEALLGDD DTLMLPMSST LWNT*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.68840.0flower| leaf| seed
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, stems, leaves, carpels, and siliques, but not in stigmas or other parts of the flower. {ECO:0000269|PubMed:11162426, ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:14581622}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3'. Binds calmodulin in a calcium-dependent manner in vitro (PubMed:12218065). Regulates transcriptional activity in response to calcium signals (Probable). Involved in freezing tolerance in association with CAMTA1 and CAMTA2 (PubMed:23581962). Required for the cold-induced expression of DREB1B/CBF1, DREB1C/CBF2, ZAT12 and GOLS3 (PubMed:19270186). Involved in response to cold. Contributes together with CAMTA5 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:28351986). Involved together with CAMTA2 and CAMTA4 in the positive regulation of a general stress response (GSR) (PubMed:25039701). Involved in the regulation of GSR amplitude downstream of MEKK1 (PubMed:25157030). Involved in the regulation of a set of genes involved in defense responses against pathogens (PubMed:18298954). Involved in the regulation of both basal resistance and systemic acquired resistance (SAR) (PubMed:21900483). Acts as negative regulator of plant immunity (PubMed:19122675, PubMed:21900483, PubMed:22345509, PubMed:28407487). Binds to the promoter of the defense-related gene EDS1 and represses its expression (PubMed:19122675). Binds to the promoter of the defense-related gene NDR1 and represses its expression (PubMed:22345509). Involved in defense against insects (PubMed:23072934, PubMed:22371088). Required for tolerance to the generalist herbivore Trichoplusia ni, and contributes to the positive regulation of genes associated with glucosinolate metabolism (PubMed:23072934). Required for tolerance to Bradysia impatiens larvae. Mediates herbivore-induced wound response (PubMed:22371088). Required for wound-induced jasmonate accumulation (PubMed:23072934, PubMed:22371088). Involved in the regulation of ethylene-induced senescence by binding to the promoter of the senescence-inducer gene EIN3 and repressing its expression (PubMed:22345509). {ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:18298954, ECO:0000269|PubMed:19122675, ECO:0000269|PubMed:19270186, ECO:0000269|PubMed:21900483, ECO:0000269|PubMed:22345509, ECO:0000269|PubMed:22371088, ECO:0000269|PubMed:23072934, ECO:0000269|PubMed:23581962, ECO:0000269|PubMed:25039701, ECO:0000269|PubMed:25157030, ECO:0000269|PubMed:28351986, ECO:0000269|PubMed:28407487, ECO:0000305|PubMed:11925432}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00078204001
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat shock, UVB, salt, wounding, ethylene and methyl jasmonate (PubMed:11162426, PubMed:12218065). Induced by infection with the fungal pathogen Golovinomyces cichoracearum (powdery mildew) and the bacterial pathogen Pseudomonas syringae pv tomato strain DC3000 (PubMed:22345509). {ECO:0000269|PubMed:11162426, ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:22345509}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009112535.10.0PREDICTED: calmodulin-binding transcription activator 3-like isoform X2
SwissprotQ8GSA70.0CMTA3_ARATH; Calmodulin-binding transcription activator 3
TrEMBLA0A078FKT80.0A0A078FKT8_BRANA; BnaA09g42730D protein
STRINGBra038534.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM86012535
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22300.20.0signal responsive 1
Publications ? help Back to Top
  1. Zhang L,Du L,Shen C,Yang Y,Poovaiah BW
    Regulation of plant immunity through ubiquitin-mediated modulation of Ca(2+) -calmodulin-AtSR1/CAMTA3 signaling.
    Plant J., 2014. 78(2): p. 269-81
    [PMID:24528504]
  2. Benn G, et al.
    A key general stress response motif is regulated non-uniformly by CAMTA transcription factors.
    Plant J., 2014. 80(1): p. 82-92
    [PMID:25039701]
  3. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  4. Rahman H,Yang J,Xu YP,Munyampundu JP,Cai XZ
    Phylogeny of Plant CAMTAs and Role of AtCAMTAs in Nonhost Resistance to Xanthomonas oryzae pv. oryzae.
    Front Plant Sci, 2016. 7: p. 177
    [PMID:26973658]
  5. Benn G, et al.
    Plastidial metabolite MEcPP induces a transcriptionally centered stress-response hub via the transcription factor CAMTA3.
    Proc. Natl. Acad. Sci. U.S.A., 2016. 113(31): p. 8855-60
    [PMID:27432993]
  6. Kidokoro S, et al.
    Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature.
    Plant Cell, 2017. 29(4): p. 760-774
    [PMID:28351986]
  7. Lolle S, et al.
    Matching NLR Immune Receptors to Autoimmunity in camta3 Mutants Using Antimorphic NLR Alleles.
    Cell Host Microbe, 2017. 21(4): p. 518-529.e4
    [PMID:28407487]
  8. Kim YS, et al.
    CAMTA-Mediated Regulation of Salicylic Acid Immunity Pathway Genes in Arabidopsis Exposed to Low Temperature and Pathogen Infection.
    Plant Cell, 2017. 29(10): p. 2465-2477
    [PMID:28982964]
  9. Jacob F, et al.
    A dominant-interfering camta3 mutation compromises primary transcriptional outputs mediated by both cell surface and intracellular immune receptors in Arabidopsis thaliana.
    New Phytol., 2018. 217(4): p. 1667-1680
    [PMID:29226970]