PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00078158001
Common NameGSBRNA2T00078158001, LOC106349238
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family LBD
Protein Properties Length: 133aa    MW: 14563.4 Da    PI: 7.7689
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00078158001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260140.94e-4412110199
               DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 
                          +CaaCk+lrrkC++dCv+apyfp e+p kfanvh++FGasnv+k+l+++ +++reda++sl+yeAear+rdPvyG+vg i+ lq+q+  l
  GSBRNA2T00078158001  12 PCAACKFLRRKCTSDCVFAPYFPPEEPTKFANVHRIFGASNVSKILQEVAPHQREDAVNSLAYEAEARLRDPVYGCVGAISVLQRQVLGL 101
                          7***************************************************************************************** PP

               DUF260  91 kaelallke 99 
                          + el+++++
  GSBRNA2T00078158001 102 QRELEETNA 110
                          ****99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089127.22911112IPR004883Lateral organ boundaries, LOB
PfamPF031956.8E-4412109IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 133 aa     Download sequence    Send to blast
MSSSYSSYTN SPCAACKFLR RKCTSDCVFA PYFPPEEPTK FANVHRIFGA SNVSKILQEV  60
APHQREDAVN SLAYEAEARL RDPVYGCVGA ISVLQRQVLG LQRELEETNA DIMRYASCLG  120
GETSSVYGAR RG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A3e-58101269126LOB family transfactor Ramosa2.1
5ly0_B3e-58101269126LOB family transfactor Ramosa2.1
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in young shoots, roots, stems, leaves and flowers. {ECO:0000269|PubMed:12068116}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00078158001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013644626.11e-94LOB domain-containing protein 25
SwissprotQ8L8Q34e-86LBD25_ARATH; LOB domain-containing protein 25
TrEMBLA0A078FH293e-93A0A078FH29_BRANA; BnaA06g31930D protein
TrEMBLA0A291LQZ53e-93A0A291LQZ5_BRARR; Transcription factor LBD25a
TrEMBLA0A397Z3H93e-93A0A397Z3H9_BRACM; Uncharacterized protein
TrEMBLM4E9383e-93M4E938_BRARP; Uncharacterized protein
STRINGBra025294.1-P5e-94(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM13128340
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G27650.11e-86LOB domain-containing protein 25
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  2. Kim M,Kim MJ,Pandey S,Kim J
    Expression and Protein Interaction Analyses Reveal Combinatorial Interactions of LBD Transcription Factors During Arabidopsis Pollen Development.
    Plant Cell Physiol., 2016. 57(11): p. 2291-2299
    [PMID:27519310]