PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00078065001

Common Name

GSBRNA2T00078065001, LOC106349326

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

LBD

Protein Properties

Length: 122aa MW: 13593.8 Da PI: 8.689

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00078065001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	125.1	3.4e-39	5	104	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 +CaaCk+lrr+C+kdC+++pyfp +p kfa++h+++Ga nv+k+l++lp ++r +a++sl +eA++r++dPvyG+vg+i+ lq +++++ GSBRNA2T00078065001 5 RCAACKYLRRRCPKDCIFSPYFPPGDPDKFACIHRIYGAGNVSKMLQQLPVQTRAEAVESLSFEAKCRVEDPVYGCVGIISLLQTEIQKT 94 6*************************************************************************************** PP DUF260 91 kaelallkee 100 ++ la++++e GSBRNA2T00078065001 95 QTLLARTQAE 104 99999887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	23.499	4	105	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.9E-38	5	102	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 122 aa Download sequence Send to blast
MNPKRCAACK YLRRRCPKDC IFSPYFPPGD PDKFACIHRI YGAGNVSKML QQLPVQTRAE 60 AVESLSFEAK CRVEDPVYGC VGIISLLQTE IQKTQTLLAR TQAEIAVAQA KHSQTQVNEF 120 M*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	5e-37	6	105	12	111	LOB family transfactor Ramosa2.1
5ly0_B	5e-37	6	105	12	111	LOB family transfactor Ramosa2.1
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Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00381	DAP	Transfer from AT3G26620	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00078065001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB473847	1e-104	AB473847.1 Arabidopsis thaliana ASL14 mRNA for ASYMMETRIC LEAVES2-like 14 protein, complete cds.
GenBank	DQ056609	1e-104	DQ056609.1 Arabidopsis thaliana putative LOB domain protein (At3g26620) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009152040.1	1e-86	PREDICTED: LOB domain-containing protein 23
Refseq	XP_013644728.1	1e-86	LOB domain-containing protein 23
Refseq	XP_022543623.1	1e-86	LOB domain-containing protein 23-like
Swissprot	P59467	4e-74	LBD23_ARATH; LOB domain-containing protein 23
Swissprot	P59468	5e-74	LBD24_ARATH; LOB domain-containing protein 24
TrEMBL	A0A078FKY4	2e-85	A0A078FKY4_BRANA; BnaA06g32760D protein
TrEMBL	A0A291LR06	2e-85	A0A291LR06_BRARR; Transcription factor LBD24
TrEMBL	A0A397ZCU9	2e-85	A0A397ZCU9_BRACM; Uncharacterized protein
STRING	Bo7g083780.1	3e-80	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM131	28	340

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G26620.1	2e-76	LOB domain-containing protein 23

Link Out ? help Back to Top
Entrez Gene	106349326

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]