PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00077809001 | ||||||||
Common Name | GSBRNA2T00077809001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | MYB | ||||||||
Protein Properties | Length: 912aa MW: 101236 Da PI: 5.4313 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 55.8 | 1e-17 | 32 | 78 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT+eEde l +av+++ g++Wk+Ia+++ Rt+ qc +rwqk+l GSBRNA2T00077809001 32 KGQWTAEEDEVLCKAVERFQGKNWKKIAECFK-DRTDVQCLHRWQKVL 78 799****************************9.************986 PP | |||||||
2 | Myb_DNA-binding | 59 | 1.1e-18 | 84 | 130 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEd+ ++ +v+++G++ W+tI++ ++ gR +kqc++rw+++l GSBRNA2T00077809001 84 KGPWSKEEDDTIIALVEKYGPKKWSTISQQLP-GRIGKQCRERWHNHL 130 79******************************.*************97 PP | |||||||
3 | Myb_DNA-binding | 48.9 | 1.5e-15 | 136 | 178 | 1 | 45 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 +++WT+eE++ l++a++ +G++ W+ + ++ gR+++++k++w+ GSBRNA2T00077809001 136 KNAWTQEEELTLIRAHQIYGNK-WAELTKFLP-GRSDNSIKNHWN 178 689*******************.*********.***********8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 16.067 | 27 | 78 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.8E-18 | 30 | 92 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.7E-14 | 31 | 80 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.0E-14 | 32 | 78 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.6E-21 | 33 | 90 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.24E-13 | 35 | 78 | No hit | No description |
PROSITE profile | PS51294 | 32.042 | 79 | 134 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 5.99E-31 | 81 | 177 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.4E-17 | 83 | 132 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.89E-15 | 86 | 130 | No hit | No description |
Pfam | PF13921 | 1.7E-17 | 87 | 145 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 7.5E-27 | 91 | 137 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 18.31 | 135 | 185 | IPR017930 | Myb domain |
SMART | SM00717 | 9.4E-15 | 135 | 183 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.3E-21 | 138 | 185 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.71E-11 | 138 | 178 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 912 aa Download sequence Send to blast |
MKSEMKAPTI PHEGSKKGSH GRPCGPARRS TKGQWTAEED EVLCKAVERF QGKNWKKIAE 60 CFKDRTDVQC LHRWQKVLNP ELVKGPWSKE EDDTIIALVE KYGPKKWSTI SQQLPGRIGK 120 QCRERWHNHL NPGINKNAWT QEEELTLIRA HQIYGNKWAE LTKFLPGRSD NSIKNHWNSS 180 VKKKLDSYYA SGLLDQSQSS PLIPIQTNSI ASSSSWMHSS GDEGNFRPGA DAEESECSQA 240 STVFSCSQST NDLLDEAKPA NEEFYTPVLP AGTEQQISNS PSHAESYYPS FEDVKIVLPE 300 ISCEAESSKE YQNHNGLTEV RTTAATEDHL QAVCNNDKQD RDLDCPQLLG DETNEACQAF 360 QNSVRISDQP SLPNSDTDMH PQPQTLITDE ECCRVLFTNT TEDNGVASNA QGQNLVDPQK 420 GKGSIPASET ENIPALSWHP SNCKDSVQDC HLLEATALEH KVDTNDSFID TDGHVTSHGN 480 DDNEGIPDQQ KPSYIPKDSL KLVPLNNFTS PARVNKINFP VNDKPAEKDK GSLCYEPPRF 540 PSADIPFFSC DLVPSNSDLR QEYSPFGIRQ LMMNCTTPLK LWDSPCRNKS PDVMLKDAAK 600 SFSGTPSILK KRQHRDLMSP VLDRRKEKLL KSAEASSLAK DFSRLDVMLN HCNSSILSER 660 PDNKNEYASS SEAKKDPKET LEAGVTSVKI DQETRRSLVY CNDVEMQLSS PDKSGSKPDN 720 KVNTTASEPP FTVDSIPLST IAGNKTNTAE SSFDIIENCS IFDGTPFKKL LDTPSPWKSP 780 LLFGSFLQSP KLPSDITFED IGCFMSPGDR SYDAIGLMKH LSEHTATAYA DALEVLGNDT 840 PETILKKRQM NKSIQGKENQ LWPHDQLENR SQVERRALDF SDCGTPGKAK VSSASPGGYS 900 SPSSYLLKSC R* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h88_C | 1e-65 | 32 | 185 | 6 | 159 | MYB PROTO-ONCOGENE PROTEIN |
1h89_C | 1e-65 | 32 | 185 | 6 | 159 | MYB PROTO-ONCOGENE PROTEIN |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Accumulates in the columella root cap. Also present in floral organs in young flower buds. Strongly expressed in vascular tissues of filaments and anthers. Weakly and uniformly present in the developing embryo and maternal tissues (PubMed:17287251). Expressed both in proliferating and maturing stages of leaves (PubMed:26069325). {ECO:0000269|PubMed:17287251, ECO:0000269|PubMed:26069325}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed ubiquitously at low levels (PubMed:10743663). Expressed in roots, cotyledons, flowers and leaves, especially in vascular tissues (PubMed:17287251). {ECO:0000269|PubMed:10743663, ECO:0000269|PubMed:17287251}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds 5'-AACGG-3' motifs in gene promoters (PubMed:21862669). Transcription activator involved in the regulation of cytokinesis, probably via the activation of several G2/M phase-specific genes transcription (e.g. KNOLLE) (PubMed:17287251, PubMed:21862669). Transcription repressor that regulates organ growth. Binds to the promoters of G2/M-specific genes and to E2F target genes to prevent their expression in post-mitotic cells and to restrict the time window of their expression in proliferating cells (PubMed:26069325). Required for the maintenance of diploidy (PubMed:21862669). {ECO:0000269|PubMed:17287251, ECO:0000269|PubMed:21862669, ECO:0000269|PubMed:26069325}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00077809001 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Constant levels during cell cycle. Activated by CYCB1. {ECO:0000269|PubMed:17287251}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009138139.1 | 0.0 | PREDICTED: myb-related protein 3R-1-like | ||||
Refseq | XP_009138140.1 | 0.0 | PREDICTED: myb-related protein 3R-1-like | ||||
Swissprot | Q9S7G7 | 0.0 | MB3R1_ARATH; Transcription factor MYB3R-1 | ||||
TrEMBL | A0A078FKL8 | 0.0 | A0A078FKL8_BRANA; BnaA03g52170D protein | ||||
TrEMBL | A0A397KXG5 | 0.0 | A0A397KXG5_BRACM; Uncharacterized protein | ||||
STRING | Bra037045.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4674 | 26 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G32730.2 | 0.0 | Homeodomain-like protein |
Publications ? help Back to Top | |||
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