PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00077744001
Common NameGSBRNA2T00077744001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family B3
Protein Properties Length: 302aa    MW: 34472.7 Da    PI: 9.1528
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00077744001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B362.18.9e-2075168498
                          E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
                   B3   4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                          + +++++l+++ l lp +  +++ ++k+++ ++++ +++g+ W++ l++r +sg+y++++ W++F+++n+ k gD +vF l+g+ +++++
  GSBRNA2T00077744001  75 AQVTASNLRLDTLDLPMETESSNALNKRCH-EMIVVNKEGKYWTLSLRFRESSGSYYIRGAWRRFCRDNKQKIGDLMVFNLVGDGKTSPM 163
                          4568999*******************9887.9999*************************************************9999** PP

                          EEEE- CS
                   B3  94 vkvfr 98 
                          + v+ 
  GSBRNA2T00077744001 164 ICVCP 168
                          **997 PP
2B352.87.4e-17196293199
                          EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE....EEETTE.EEE-TTHHHHHHHHT--.TT-EEEEEE-S CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy..rkksgr.yvltkGWkeFvkangLk.egDfvvFkldg 86 
                          f+++ ++ ++++s+ l+lp +f++ +g+kk  + +++l+d++g +W  kl    +  + +   l+kGWk+F++an++   g+ ++++l++
  GSBRNA2T00077744001 196 FVTISLTRYNFRSSKLILPATFMKINGIKK--QNEIILMDKHGVKWVTKLVKdgS--KYGkRGLGKGWKGFCEANDVLkIGEPFLLELVW 281
                          7788899****************7777664..459***************77433..3333579***********9644*********** PP

                          SSEE..EEEEE-S CS
                   B3  87 rsefelvvkvfrk 99 
                           +++ +v+k+++k
  GSBRNA2T00077744001 282 -EDTLPVLKFCSK 293
                          .666699999987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.16E-1771164IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.33872170IPR003340B3 DNA binding domain
CDDcd100171.01E-1572168No hitNo description
Gene3DG3DSA:2.40.330.101.4E-1672160IPR015300DNA-binding pseudobarrel domain
SMARTSM010193.3E-1973170IPR003340B3 DNA binding domain
PfamPF023622.8E-1875168IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.9E-20188293IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.14E-19190292IPR015300DNA-binding pseudobarrel domain
CDDcd100172.37E-14195292No hitNo description
PfamPF023625.4E-16196293IPR003340B3 DNA binding domain
PROSITE profilePS5086311.124196293IPR003340B3 DNA binding domain
SMARTSM010194.4E-25196294IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MNCLNSMANP PLESPTNPHF FQPLLPGFDT HLTIPVAFFS KHIEEKNNDD DNVNHCSTNK  60
TEPKSSFSFD YCFVAQVTAS NLRLDTLDLP METESSNALN KRCHEMIVVN KEGKYWTLSL  120
RFRESSGSYY IRGAWRRFCR DNKQKIGDLM VFNLVGDGKT SPMICVCPEE ECSELVRKTK  180
RRSNWVASSS SRRNRFVTIS LTRYNFRSSK LILPATFMKI NGIKKQNEII LMDKHGVKWV  240
TKLVKDGSKY GKRGLGKGWK GFCEANDVLK IGEPFLLELV WEDTLPVLKF CSKVKVETIC  300
D*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00077744001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013716609.11e-173B3 domain-containing protein REM7-like
RefseqXP_013716702.11e-173B3 domain-containing protein REM7-like
RefseqXP_013719582.11e-173B3 domain-containing protein REM7-like
TrEMBLA0A078FG760.0A0A078FG76_BRANA; BnaA03g51680D protein
STRINGBra023988.1-P1e-162(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM20422261
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24645.11e-52B3 family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]