PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00077589001
Common NameGSBRNA2T00077589001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MIKC_MADS
Protein Properties Length: 193aa    MW: 22487.3 Da    PI: 10.2055
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00077589001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF90.96.3e-29959151
                         S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
               SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                         k+ien++ rqvtfskRr+g++KKA+ELSvLCda+va iifs++g+ly+++s
  GSBRNA2T00077589001  9 KKIENTTSRQVTFSKRRKGLFKKAHELSVLCDAQVAAIIFSQKGRLYDFAS 59
                         68***********************************************86 PP
2K-box67.64e-23851681194
                K-box  11 eakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaL 94 
                          e+  + l++e+  + ++ie+L+  +R+l+G++L s+s+keLq++ +q+eksl  +Rs+K +l+ ++ie+l+ ke+el++e  +L
  GSBRNA2T00077589001  85 EQYVQGLKKEMVTMVEKIEMLEVHNRKLMGQNLASCSVKELQEIATQIEKSLHIVRSRKAKLYGDEIEKLKAKERELKDERVRL 168
                          6778999***************999*****************************************************998776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.1E-40160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006631.314161IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.88E-31387IPR002100Transcription factor, MADS-box
PRINTSPR004043.8E-29323IPR002100Transcription factor, MADS-box
CDDcd002653.52E-39373No hitNo description
PfamPF003192.6E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004043.8E-292338IPR002100Transcription factor, MADS-box
PRINTSPR004043.8E-293859IPR002100Transcription factor, MADS-box
PfamPF014869.0E-2288168IPR002487Transcription factor, K-box
PROSITE profilePS5129712.33888182IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 193 aa     Download sequence    Send to blast
MVRGKIQIKK IENTTSRQVT FSKRRKGLFK KAHELSVLCD AQVAAIIFSQ KGRLYDFASS  60
DIQKTIKRYA EYKTEYFVAE SHPMEQYVQG LKKEMVTMVE KIEMLEVHNR KLMGQNLASC  120
SVKELQEIAT QIEKSLHIVR SRKAKLYGDE IEKLKAKERE LKDERVRLFN IIIYIKEDVE  180
TDLVIGFPKS RR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A1e-20193190MEF2C
5f28_B1e-20193190MEF2C
5f28_C1e-20193190MEF2C
5f28_D1e-20193190MEF2C
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed in the shoot apical meristem (SAM) during the vegetative phase and the floral transition. After floral transition, expressed in apical meristem (AM), inflorescence meristem (IM) and floral primordia. {ECO:0000269|PubMed:21609362}.
Functional Description ? help Back to Top
Source Description
UniProtMADS-box transcription factor that acts with AGL42 and AGL71 in the control of flowering time. Promotes flowering at the shoot apical and axillary meristems. Seems to act through a gibberellin-dependent pathway. Interacts genetically with SOC1 and its expression is directly regulated by SOC1. {ECO:0000269|PubMed:21609362}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00077589001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009107059.11e-127PREDICTED: MADS-box protein AGL72 isoform X1
RefseqXP_009107066.11e-127PREDICTED: MADS-box protein AGL72 isoform X1
RefseqXP_009107076.11e-127PREDICTED: MADS-box protein AGL72 isoform X1
RefseqXP_022575923.11e-127MADS-box protein AGL72-like isoform X5
SwissprotQ9FLH51e-108AGL72_ARATH; MADS-box protein AGL72
TrEMBLA0A078JPQ51e-137A0A078JPQ5_BRANA; BnaAnng28250D protein
STRINGBra028282.1-P1e-126(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM7828413
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51860.11e-110MIKC_MADS family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]