PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00077207001 | ||||||||
Common Name | GSBRNA2T00077207001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | GRF | ||||||||
Protein Properties | Length: 356aa MW: 39144.2 Da PI: 7.0952 | ||||||||
Description | GRF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRC | 69.5 | 4.1e-22 | 137 | 170 | 1 | 34 |
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhr 34 d+epgrCrRtDGKkWRCsr+v +g+k+CErH+h GSBRNA2T00077207001 137 DPEPGRCRRTDGKKWRCSRDVFAGHKYCERHMHP 170 79******************************95 PP | |||||||
2 | QLQ | 53.8 | 5.7e-19 | 71 | 107 | 1 | 37 |
QLQ 1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 s F++aQ+q+L+ Q+l+y+y++a++ vP+eLl++i+k GSBRNA2T00077207001 71 SFFSWAQWQELELQALIYRYMLAGAAVPQELLLPIKK 107 67*********************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00951 | 5.3E-12 | 71 | 107 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51666 | 20.247 | 72 | 107 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
Pfam | PF08880 | 6.0E-13 | 73 | 105 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51667 | 21.343 | 137 | 182 | IPR014977 | WRC domain |
Pfam | PF08879 | 2.8E-18 | 138 | 169 | IPR014977 | WRC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005524 | Molecular Function | ATP binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 356 aa Download sequence Send to blast |
MDLQLKQWRS QQQTEPEEQP SAAKIPKHVF DQFQPQTAAS TALPLFTPDP TPSKLSSLSA 60 DSSARFPKMG SFFSWAQWQE LELQALIYRY MLAGAAVPQE LLLPIKKSLL HLSPSYFLHQ 120 HLPHYQPAWY LGRGAMDPEP GRCRRTDGKK WRCSRDVFAG HKYCERHMHP AAPAPTTTSF 180 AFGGGEEVGQ GGSPCFFFSG ASNSSSELLN LSQSCSEMKQ DTNNNNKRPY ESHNGFGNNT 240 SDGGHTLRHF FDDWPRSEAD NNNSSPMTSA TCLSISMPGN SSSDVSLKLS TGNEEEARSN 300 GRDQQNMNSW WSGGGPHHNN NNHMGGPLAE ALRSSSSTSP TSVLHQLGVS TQAFH* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Bna.19137 | 0.0 | seed |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Expressed during the early stages of leaf development and expression decreases with the maturation of the leaf. {ECO:0000269|PubMed:20023165}. | |||||
Uniprot | TISSUE SPECIFICITY: Strongly expressed in actively growing and developing tissues, such as roots, upper stems, and shoot tips containing the shoot apical meristem (SAM) and flower buds. Also expressed in mature flowers, but weakly expressed in mature stems and leaves. {ECO:0000269|PubMed:12974814}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that plays a role in the regulation of cell expansion in leaf and cotyledons tissues. Component of a network formed by miR396, the GRFs and their interacting factors (GIFs) acting in the regulation of meristem function, at least partially through the control of cell proliferation. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00077207001 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: microRNA 396 (miR396a or miR396b) negatively regulates growth-regulating factors (GRF1-4 and GRF7-9). {ECO:0000269|PubMed:15200956, ECO:0000269|PubMed:19453503, ECO:0000269|PubMed:20023165}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK117417 | 1e-155 | AK117417.1 Arabidopsis thaliana At2g36400 mRNA for unknown protein, complete cds, clone: RAFL17-02-B13. | |||
GenBank | AY102636 | 1e-155 | AY102636.1 Arabidopsis thaliana transcription activator (GRF3) mRNA, complete cds. | |||
GenBank | BT026472 | 1e-155 | BT026472.1 Arabidopsis thaliana At2g36400 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013687589.1 | 0.0 | growth-regulating factor 3-like | ||||
Swissprot | Q8L8A7 | 1e-129 | GRF4_ARATH; Growth-regulating factor 4 | ||||
TrEMBL | A0A078I1P7 | 0.0 | A0A078I1P7_BRANA; BnaAnng07360D protein | ||||
TrEMBL | A0A3P6CQW1 | 0.0 | A0A3P6CQW1_BRACM; Uncharacterized protein | ||||
STRING | Bra017240.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1926 | 26 | 67 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G52910.1 | 7e-90 | growth-regulating factor 4 |
Publications ? help Back to Top | |||
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