PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00077008001 | ||||||||
Common Name | GSBRNA2T00077008001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 814aa MW: 89182.4 Da PI: 6.5427 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 57.5 | 2.3e-18 | 19 | 77 | 3 | 57 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 k ++t+eq+e+Le+++ ++++ps +r++L +++ +++ +q+kvWFqNrR +ek+ GSBRNA2T00077008001 19 KYVRYTPEQVEALERVYTECPKPSSLRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 77 5678*****************************************************97 PP | |||||||
2 | START | 182.7 | 2e-57 | 169 | 377 | 2 | 205 |
HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..E CS START 2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..g 89 +a ea++e+++ka+ ++ Wv++ +++g++++ +++ s+++sg a+ra+g+v +++ v+e+l+d++ W +++++++tl vi g g GSBRNA2T00077008001 169 IAKEALAEFLSKATGTAVDWVQMIGMKPGPDSIGIVAISRNCSGIAARACGLVSLEPM-KVAEILKDRPSWLRDCRSVDTLSVIPAGngG 257 6889******************************************************.8888888888*****************999* PP EEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SS CS START 90 alqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgr 175 +++l++++++a+++l++ Rdf+++Ry+ +l++g++v++++S++ + p+ ss++vRae++pSg+li+p+++g+s +++v+hvdl++ GSBRNA2T00077008001 258 TIELIYTQMYAPTTLAAaRDFWTLRYTTCLEDGSYVVCERSLSAATGGPTgppSSNFVRAEMRPSGFLIRPCDGGGSILHIVDHVDLDAL 347 ********************************************999999999************************************* PP XXHHHHHHHHHHHHHHHHHHHHHHTXXXXX CS START 176 lphwllrslvksglaegaktwvatlqrqce 205 ++++++r+l++s+ + ++k++va+l++ ++ GSBRNA2T00077008001 348 SVPEVMRPLYESSKILAQKMTVAALRHVRQ 377 *************************98765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 15.321 | 14 | 78 | IPR001356 | Homeobox domain |
SMART | SM00389 | 5.7E-15 | 16 | 82 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 8.13E-17 | 18 | 82 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 3.80E-16 | 19 | 79 | No hit | No description |
Pfam | PF00046 | 6.1E-16 | 20 | 77 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 1.9E-18 | 21 | 77 | IPR009057 | Homeodomain-like |
CDD | cd14686 | 5.17E-6 | 71 | 110 | No hit | No description |
PROSITE profile | PS50848 | 26.809 | 159 | 387 | IPR002913 | START domain |
CDD | cd08875 | 6.32E-75 | 163 | 379 | No hit | No description |
SMART | SM00234 | 3.5E-60 | 168 | 378 | IPR002913 | START domain |
SuperFamily | SSF55961 | 8.24E-36 | 168 | 380 | No hit | No description |
Gene3D | G3DSA:3.30.530.20 | 1.4E-22 | 168 | 373 | IPR023393 | START-like domain |
Pfam | PF01852 | 6.0E-55 | 169 | 377 | IPR002913 | START domain |
Pfam | PF08670 | 2.2E-48 | 667 | 812 | IPR013978 | MEKHLA |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0008289 | Molecular Function | lipid binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 814 aa Download sequence Send to blast |
MMVHTMHRES PDKGLDSGKY VRYTPEQVEA LERVYTECPK PSSLRRQQLI RECPILSNIE 60 PKQIKVWFQN RRCREKQRKE AARLQTVNRK LNAMNKLLME ENDRLQKQVS HLVYENGHMK 120 HQIHTASGTT TDNSCESVVV ASGQQHQQQN PNPQHLQRDA NNPAGLLSIA KEALAEFLSK 180 ATGTAVDWVQ MIGMKPGPDS IGIVAISRNC SGIAARACGL VSLEPMKVAE ILKDRPSWLR 240 DCRSVDTLSV IPAGNGGTIE LIYTQMYAPT TLAAARDFWT LRYTTCLEDG SYVVCERSLS 300 AATGGPTGPP SSNFVRAEMR PSGFLIRPCD GGGSILHIVD HVDLDALSVP EVMRPLYESS 360 KILAQKMTVA ALRHVRQIAQ ETSGEVQYGG GRQPAVLRTF SQRLSRGFND AVNGFVDDGC 420 FGSGVLCAKA SMLLQNVPPA VLVRFLREHR SEWADYGVDA YAAASLRASP FAVPCARAGG 480 LPSNQVILPL AQTVEHEEFL EVVRLEGHAY SPEDMGLARD MYLLQLCSGV DEDVVGGCAQ 540 LVFAPIDESF ADDAPLLPSG FRVIPLEPKS TSNNASVNRT LDLASALEGS TRQGGEADPN 600 GCHFRSVLTI AFQFTFDNHT RDNVASMARQ YVRNIVGSIQ RVALAIAPRP DSSISPISAP 660 TSPEALTLVR WISRSYRVHT GVDLFGSDSQ ISGDTLLHQV WSHTDAILCC SMKTNASPVF 720 TFANQTGLDM LETTLVSLQD ITLDKTLDEP GRKALCSEFP KIMQQGYAHL PAGVCASSMG 780 RLVSYEQATV WKVLEDDESN HCLAFMFVNW SFV* |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Expressed at the youngest stages of ovule development, predominantly to the adaxial side of the ovule primordium. Later, expression becomes restricted to a region in the distal chalaza. When the integuments initiate, expressed in the inner integument, with highest expression in the inner layer of the inner integument. Expressed in the vegetative shoot apical meristem (SAM) and initially throughout the presumptive cotyledons. At the globular stage, just before cotyledon outgrowth, expressed at high levels in cotyledon adaxial domains. Expression is lost from the SAM of torpedo stage embryos but is regained late in embryogenesis, extending to young primordia after germination, and becoming progressively restricted to the adaxial domain and the vasculature. Preferentially expressed in the adaxial domain of the developing leaf. Expressed throughout the plastochron 0 (P0) leaf primordium and expression increases in P1 to become preferentially localized to the adaxial leaf domain by the P2 stage (polar expression). {ECO:0000269|PubMed:11395776, ECO:0000269|PubMed:15328016}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in the center of the meristem and on the adaxial side of the leaves. {ECO:0000269|PubMed:11395776}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in the determination of adaxial-abaxial polarity in ovule primordium. Specifies adaxial leaf fates. {ECO:0000269|PubMed:11395776, ECO:0000269|PubMed:15328016, ECO:0000269|PubMed:15598805}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00077008001 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by miR165 and miR166. {ECO:0000269|PubMed:14999284, ECO:0000269|PubMed:16033795, ECO:0000269|PubMed:17237362}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AJ441291 | 0.0 | AJ441291.1 Arabidopsis thaliana mRNA for homeodomain-leucine zipper protein 14 (ATHB-14 gene). | |||
GenBank | AY099791 | 0.0 | AY099791.1 Arabidopsis thaliana homeodomain transcription factor (At2g34710) mRNA, complete cds. | |||
GenBank | BT000335 | 0.0 | BT000335.1 Arabidopsis thaliana homeodomain transcription factor (At2g34710) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013744548.1 | 0.0 | homeobox-leucine zipper protein ATHB-14-like | ||||
Swissprot | O04291 | 0.0 | ATB14_ARATH; Homeobox-leucine zipper protein ATHB-14 | ||||
TrEMBL | A0A078I1I9 | 0.0 | A0A078I1I9_BRANA; BnaA04g20300D protein | ||||
STRING | Bra021926.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4256 | 26 | 53 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G34710.1 | 0.0 | HD-ZIP family protein |