PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00076988001 | ||||||||
Common Name | GSBRNA2T00076988001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | B3 | ||||||||
Protein Properties | Length: 151aa MW: 17694.3 Da PI: 9.728 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 53.9 | 3.2e-17 | 19 | 110 | 1 | 96 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrse 89 f k++ +d +++++ ++p + +++ + + s ++++ ++g sWev + +k+++ y+ ++GW++Fv++n L ++fv+F+++g+++ GSBRNA2T00076988001 19 FSKTFACADLSSECMRTFPFDLMKSLPK-EDLSNKMVIIAKWGSSWEVDI--SKNPRFyYMEKSGWNQFVRDNALGKNEFVTFTHKGSMC 105 6788888899999999999999988853.458889***************..******566669**********************9999 PP E..EEEE CS B3 90 felvvkv 96 f v + GSBRNA2T00076988001 106 F--DVNI 110 9..5554 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 5.4E-17 | 13 | 114 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 9.22E-18 | 14 | 117 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 6.51E-14 | 18 | 111 | No hit | No description |
Pfam | PF02362 | 2.0E-14 | 19 | 109 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 11.617 | 19 | 114 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 8.4E-17 | 19 | 114 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 151 aa Download sequence Send to blast |
MDMNSWFDRV KEDRKNLSFS KTFACADLSS ECMRTFPFDL MKSLPKEDLS NKMVIIAKWG 60 SSWEVDISKN PRFYYMEKSG WNQFVRDNAL GKNEFVTFTH KGSMCFDVNI YGKDEKEVVR 120 PPTMASSSKA FFTSNDVFMK VRRWRIKKEN * |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 141 | 148 | RRWRIKKE |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00076988001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009141415.1 | 3e-90 | PREDICTED: B3 domain-containing protein At3g17010-like | ||||
Refseq | XP_009141417.1 | 3e-90 | PREDICTED: B3 domain-containing protein At3g17010-like | ||||
Refseq | XP_022557136.1 | 1e-90 | B3 domain-containing protein At2g35310-like isoform X1 | ||||
Swissprot | Q5PNU4 | 2e-43 | Y2531_ARATH; B3 domain-containing protein At2g35310 | ||||
TrEMBL | A0A078I217 | 1e-106 | A0A078I217_BRANA; BnaA04g20470D protein | ||||
STRING | Bra021943.1-P | 1e-89 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM565 | 21 | 135 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G16210.2 | 6e-46 | B3 family protein |
Publications ? help Back to Top | |||
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