PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00076462001
Common NameGSBRNA2T00076462001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family NAC
Protein Properties Length: 296aa    MW: 34464.8 Da    PI: 8.8762
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00076462001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM155.42.5e-48251522128
                  NAM   2 ppGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 
                           pGfrFhPtdeelv +yL kkv  kk  +++e+i+++diyk++PwdLp+  k++eke yfF++r +ky+++ r+nr+t sg+Wkatg dk
  GSBRNA2T00076462001  25 LPGFRFHPTDEELVGFYLSKKVFLKKsSKIDEIISQIDIYKFDPWDLPR--KNTEKESYFFCRRGRKYRNSIRPNRVTGSGFWKATGIDK 112
                          59*******************877774778889***************4..45689********************************** PP

                  NAM  91 evlsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128
                          +v+s   +++++glkktLv+y g+a kg+ktdW+mhe+rl
  GSBRNA2T00076462001 113 PVYSDgsSKAVIGLKKTLVYYLGSAGKGSKTDWMMHEFRL 152
                          ****9666677***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100551.26724176IPR003441NAC domain
SuperFamilySSF1019412.48E-5124176IPR003441NAC domain
PfamPF023652.4E-2426152IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    Send to blast
MDEAMGSWDT RREEQEEEEK QVLKLPGFRF HPTDEELVGF YLSKKVFLKK SSKIDEIISQ  60
IDIYKFDPWD LPRKNTEKES YFFCRRGRKY RNSIRPNRVT GSGFWKATGI DKPVYSDGSS  120
KAVIGLKKTL VYYLGSAGKG SKTDWMMHEF RLPTANDTIP VMNFGEVWTL CRIFKRNVSS  180
RKYTPDWREL AGGKRMKPQQ SKYQEAYISF GDNESSSSTN NINVMERKEN YERNVFQLRQ  240
TPHQHQPIPV DTTITTQVDS TVPHFSNDNI HDITYENWDE LRSVVEFAFG PSFLS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-44151827171NO APICAL MERISTEM PROTEIN
1ut4_B2e-44151827171NO APICAL MERISTEM PROTEIN
1ut7_A2e-44151827171NO APICAL MERISTEM PROTEIN
1ut7_B2e-44151827171NO APICAL MERISTEM PROTEIN
3swm_A2e-441518210174NAC domain-containing protein 19
3swm_B2e-441518210174NAC domain-containing protein 19
3swm_C2e-441518210174NAC domain-containing protein 19
3swm_D2e-441518210174NAC domain-containing protein 19
3swp_A2e-441518210174NAC domain-containing protein 19
3swp_B2e-441518210174NAC domain-containing protein 19
3swp_C2e-441518210174NAC domain-containing protein 19
3swp_D2e-441518210174NAC domain-containing protein 19
4dul_A2e-44151827171NAC domain-containing protein 19
4dul_B2e-44151827171NAC domain-containing protein 19
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, root caps, cotyledons, tips and margin of young leaves, senescent regions of fully expanded leaves and floral tissues, including old sepals, petals, staments, mature anthers and pollen grains. Not detected in the abscission zone of open flowers, emerging lateral roots and root meristematic zones. {ECO:0000269|PubMed:22345491}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the 5'- RRYGCCGT-3' consensus core sequence. Central longevity regulator. Negative regulator of leaf senescence. Modulates cellular H(2)O(2) levels and enhances tolerance to various abiotic stresses through the regulation of DREB2A. {ECO:0000269|PubMed:22345491}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00076462001
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by H(2)O(2), paraquat, ozone, 3-aminotriazole and salt stress. {ECO:0000269|PubMed:22345491}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0266452e-96AB026645.1 Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MGH6.
GenBankCP0026862e-96CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013673189.10.0transcription factor JUNGBRUNNEN 1
SwissprotQ9SK552e-74NAC42_ARATH; Transcription factor JUNGBRUNNEN 1
TrEMBLA0A078I0N10.0A0A078I0N1_BRANA; BnaA01g30220D protein
STRINGBra039353.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM30628200
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12910.11e-155NAC family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  2. Shahnejat-Bushehri S,Nobmann B,Devi Allu A,Balazadeh S
    JUB1 suppresses Pseudomonas syringae-induced defense responses through accumulation of DELLA proteins.
    Plant Signal Behav, 2016. 11(6): p. e1181245
    [PMID:27159137]
  3. Shahnejat-Bushehri S,Tarkowska D,Sakuraba Y,Balazadeh S
    Arabidopsis NAC transcription factor JUB1 regulates GA/BR metabolism and signalling.
    Nat Plants, 2016. 2: p. 16013
    [PMID:27249348]
  4. Shahnejat-Bushehri S, et al.
    Arabidopsis NAC Transcription Factor JUNGBRUNNEN1 Exerts Conserved Control Over Gibberellin and Brassinosteroid Metabolism and Signaling Genes in Tomato.
    Front Plant Sci, 2017. 8: p. 214
    [PMID:28326087]
  5. Sakuraba Y,Bülbül S,Piao W,Choi G,Paek NC
    Arabidopsis EARLY FLOWERING3 increases salt tolerance by suppressing salt stress response pathways.
    Plant J., 2017. 92(6): p. 1106-1120
    [PMID:29032592]
  6. Ebrahimian-Motlagh S, et al.
    JUNGBRUNNEN1 Confers Drought Tolerance Downstream of the HD-Zip I Transcription Factor AtHB13.
    Front Plant Sci, 2017. 8: p. 2118
    [PMID:29326734]