PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00076109001 | ||||||||
Common Name | GSBRNA2T00076109001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 690aa MW: 78029.4 Da PI: 6.0255 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 51.2 | 2.1e-16 | 29 | 79 | 6 | 56 |
S--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 6 tftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 ++t++q++ Le++F+++++p++++re + l+L +qVk+WFqN+R++ k GSBRNA2T00076109001 29 RHTPQQIQKLEAYFKECPHPNESQREAFCSVLDLGIDQVKFWFQNKRTQSK 79 689*********************************************998 PP | |||||||
2 | START | 108.8 | 8.4e-35 | 210 | 434 | 3 | 206 |
HHHHHHHHHHHHHHC-TT-EEEE...EXCCTTEEEEEEESSS.......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EE CS START 3 aeeaaqelvkkalaeepgWvkss...esengdevlqkfeeskv......dsgealrasgvvdmvlallveellddkeqWdetla....ka 79 a +a +el ++ +e++Wv ss + + +e++ kf+ s ++e +++++vv+ +++ l +ld+ +W+ ++ ka GSBRNA2T00076109001 210 AATAVEELKRLFRTDEALWVMSSidgTYVIDQESYEKFSHSIKhfrnlsARVESSKDITVVPIEATSLIDMFLDSE-KWKMLFPtivnKA 298 6788999999999**********988777788888888776668899999****************9999999999.99999988888** PP EEEEEECTT.......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCE CS START 80 etlevissg.......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksngh 161 +t+ ++ s ++lq++ +l lsplvp R+f++vR+++q g+g w+i+dvS ds+ ++++ + + ++pSg+li++++n h GSBRNA2T00076109001 299 KTIHTLGSElpinencNVLQVIWEQLHILSPLVPpREFMIVRCCQQIGEGLWIIADVSQDSQHIFNSDQASPSCYKRPSGCLIRSLPNAH 388 **********************************************************999886666777888899************** PP EEEEEEE-EE--SSXX.HHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 162 skvtwvehvdlkgrlp.hwllrslvksglaegaktwvatlqrqcek 206 ++v w+ehv+++ h ++r lv+ + ga++w tl+r ce+ GSBRNA2T00076109001 389 TEVRWIEHVEVDHTADtHKMYRDLVSGSSGYGARRWIVTLERMCER 434 ************99988***************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.0E-15 | 6 | 79 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 4.02E-16 | 9 | 81 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 7.5E-13 | 21 | 85 | IPR001356 | Homeobox domain |
PROSITE profile | PS50071 | 14.819 | 21 | 81 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.75E-12 | 28 | 81 | No hit | No description |
Pfam | PF00046 | 6.5E-14 | 29 | 79 | IPR001356 | Homeobox domain |
PROSITE profile | PS50848 | 37.958 | 199 | 437 | IPR002913 | START domain |
SuperFamily | SSF55961 | 2.61E-25 | 200 | 435 | No hit | No description |
CDD | cd08875 | 5.64E-90 | 204 | 433 | No hit | No description |
SMART | SM00234 | 3.7E-18 | 208 | 434 | IPR002913 | START domain |
Pfam | PF01852 | 3.2E-28 | 210 | 434 | IPR002913 | START domain |
Gene3D | G3DSA:3.30.530.20 | 7.1E-6 | 210 | 400 | IPR023393 | START-like domain |
SuperFamily | SSF55961 | 5.49E-8 | 456 | 649 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0008289 | Molecular Function | lipid binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 690 aa Download sequence Send to blast |
MDYDGDGSPD NEHYTSVNAM SKEKRICHRH TPQQIQKLEA YFKECPHPNE SQREAFCSVL 60 DLGIDQVKFW FQNKRTQSKT QDERTSNILL REENKKLQLE NAAMIEVLKT VTCPPCGGPP 120 FGRDDRESNL HKMRLENAFL KTERDSLTTT KNKYQQTMLD SLTSVQRQQT FEALTSYGMN 180 LYNQPSSLES QTIQPQLLPQ MDLPQLSETA ATAVEELKRL FRTDEALWVM SSIDGTYVID 240 QESYEKFSHS IKHFRNLSAR VESSKDITVV PIEATSLIDM FLDSEKWKML FPTIVNKAKT 300 IHTLGSELPI NENCNVLQVI WEQLHILSPL VPPREFMIVR CCQQIGEGLW IIADVSQDSQ 360 HIFNSDQASP SCYKRPSGCL IRSLPNAHTE VRWIEHVEVD HTADTHKMYR DLVSGSSGYG 420 ARRWIVTLER MCERMALSSI LIMPATDWSE TIPTVEGRRS VMKLGERMLK IFNEMLIMSG 480 KVEFPQQSKC GVRISIRMNK EPGQLPGLVV TAASCLSIPL TPLQVFNCLR SKDTRHQWDV 540 LCRGNTITET ARIFTGSSGT NCITLLQPTP LWDIGQNMVQ EPQKKMMVLQ ECYMDALGGM 600 IVYSPLDMAT MSIAAAGEVD PLNIPILPSG FTISSDNSEG TLLMLAFQIL NSDENSKTRS 660 VSEIAVDRVS RLISQTVQNI KLMLNCPPE* |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in the embryo at early stage and in the endosperm. {ECO:0000269|PubMed:16778018}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00076109001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013747906.2 | 0.0 | homeobox-leucine zipper protein HDG8-like | ||||
Swissprot | Q9M9P4 | 0.0 | HDG8_ARATH; Homeobox-leucine zipper protein HDG8 | ||||
TrEMBL | A0A078HZ21 | 0.0 | A0A078HZ21_BRANA; BnaA05g32490D protein | ||||
STRING | Bra032003.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM12791 | 15 | 30 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G03260.1 | 0.0 | homeodomain GLABROUS 8 |
Publications ? help Back to Top | |||
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