PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00076031001

Common Name

GSBRNA2T00076031001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

TCP

Protein Properties

Length: 303aa MW: 33797.1 Da PI: 6.798

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00076031001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	99.6	5.5e-31	61	183	3	89
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt........................... 65 g+kdrhsk++T +g+RdRR+Rls+++a++++dLqd+LG+ ++sk i+WLl++ak ++el+ + GSBRNA2T00076031001 61 GGKDRHSKVCTVRGLRDRRIRLSVPTAIQVYDLQDRLGLSQPSKVIDWLLEAAKDDVDELPPLqfpqgfnqmypslifgessstsaasaf 150 78*************************************************************555555544444444443322222222 PP TCP 66 ..ssssaseceaesssssasnsssg............................k 89 + + + GSBRNA2T00076031001 151 pgT---------------------NlgfleswdlggsssrtrtriadtttttpR 183 220.....................133444444443322233333333333330 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51369	30.424	62	120	IPR017887	Transcription factor TCP subgroup
Pfam	PF03634	5.8E-30	62	198	IPR005333	Transcription factor, TCP

Sequence ? help Back to Top
Protein Sequence Length: 303 aa Download sequence Send to blast
MRSRDCDEDE IQANQEGDHN HQLNLNSMFQ PQNQPSSVPT SRQWTSAFRN PRIVRVSRTF 60 GGKDRHSKVC TVRGLRDRRI RLSVPTAIQV YDLQDRLGLS QPSKVIDWLL EAAKDDVDEL 120 PPLQFPQGFN QMYPSLIFGE SSSTSAASAF PGTNLGFLES WDLGGSSSRT RTRIADTTTT 180 TPRESFDLDK GKWIKQDENN NHQDHGFDTS HQNFSLTNPY NNSNASSYYN LGHLQNSLDQ 240 SGNNVTVAIP NVPYNNNLNL PPPPTMSSLF PMYPSFLGAS HHVVDGAGNL QLFSSNANRN 300 NR*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5zkt_A	3e-18	67	121	1	55	Putative transcription factor PCF6
5zkt_B	3e-18	67	121	1	55	Putative transcription factor PCF6
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Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: Expressed during ovule development (PubMed:25378179). {ECO:0000269\|PubMed:25378179}.
Uniprot	TISSUE SPECIFICITY: Expressed in cotyledons, particularly in the vascular region, in leaves, buds, flowers and immature siliques. {ECO:0000269\|PubMed:17307931}.

Functional Description ? help Back to Top
Source	Description
UniProt	Plays a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164). Participates in ovule develpment (PubMed:25378179). {ECO:0000269\|PubMed:17307931, ECO:0000269\|PubMed:25378179}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00076031001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018511839.1	0.0	PREDICTED: transcription factor TCP5-like
Refseq	XP_018511840.1	0.0	PREDICTED: transcription factor TCP5-like
Swissprot	Q9FME3	1e-145	TCP5_ARATH; Transcription factor TCP5
TrEMBL	A0A078JM83	0.0	A0A078JM83_BRANA; BnaAnng27820D protein
STRING	Bra029344.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3576	27	63

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60970.1	1e-125	TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 5

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293] Koyama T,Sato F,Ohme-Takagi M Roles of miR319 and TCP Transcription Factors in Leaf Development. Plant Physiol., 2017. 175(2): p. 874-885 [PMID:28842549]