PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00075987001 | ||||||||
Common Name | GSBRNA2T00075987001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | TCP | ||||||||
Protein Properties | Length: 387aa MW: 42347.7 Da PI: 9.0793 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 120.2 | 2.5e-37 | 27 | 132 | 2 | 103 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt...................ssssase 72 +g+kdrhsk++T++g+RdRRvRlsa++a++f+d+qd+LGfd++sk+++WL+++ak++i+el+++ GSBRNA2T00075987001 27 TGRKDRHSKVCTAKGPRDRRVRLSAHTAIQFYDVQDRLGFDRPSKAVDWLIKKAKASIDELAQLppwnpadamrnaaanakprR------ 110 79**************************************************************65443332222222222110...... PP TCP 73 ceaesssssasnsssg....kaaksaa..kskksqks 103 + + ++s + +++++q++ GSBRNA2T00075987001 111 ---------------TaaktRISPSPPppPPSQQQQQ 132 ...............1222222222221022222221 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 1.9E-32 | 27 | 128 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 34.256 | 29 | 87 | IPR017887 | Transcription factor TCP subgroup |
Sequence ? help Back to Top |
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Protein Sequence Length: 387 aa Download sequence Send to blast |
SMRHREAANG GCGEIVEVQG GHIVRSTGRK DRHSKVCTAK GPRDRRVRLS AHTAIQFYDV 60 QDRLGFDRPS KAVDWLIKKA KASIDELAQL PPWNPADAMR NAAANAKPRR TAAKTRISPS 120 PPPPPPSQQQ QQQLQFGGFE GVAEHRGNES SFLPPSMDSD SIADTIKSFF PVVGSTTEAP 180 PPNQLMHSNY HHHPPNLLSR TNSHNQDLRL SLHSFPDGPP SLLQHHHSAS ASTAEPVLFY 240 GQSNPLGYDT STGGWEQQSI QRLVAWNSGG ATETGNGGGG GFLFAPPAAT SFQPVLGQSQ 300 LYSQRGPLQS SYSPMIRAWF DPHHHHHQSI STDDLNHHHH HIPQPVHQGE FSSGFRIPAR 360 FQGQEEEQHD GLSNKPSSAS SISRHR* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 3e-20 | 34 | 87 | 1 | 54 | Putative transcription factor PCF6 |
5zkt_B | 3e-20 | 34 | 87 | 1 | 54 | Putative transcription factor PCF6 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Bna.25587 | 0.0 | flower |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Expressed in cotyledons during embryogenesis. Expressed during ovule development (PubMed:25378179). {ECO:0000269|PubMed:25378179}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in cotyledons, particularly in the vascular region, in leaves, roots, buds, flowers and immature siliques. {ECO:0000269|PubMed:17307931}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor playing a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164) (PubMed:12931144, PubMed:17307931). Required during early steps of embryogenesis (PubMed:15634699). Participates in ovule develpment (PubMed:25378179). Activates LOX2 expression by binding to the 5'-GGACCA-3' motif found in its promoter (PubMed:18816164). {ECO:0000269|PubMed:12931144, ECO:0000269|PubMed:15634699, ECO:0000269|PubMed:17307931, ECO:0000269|PubMed:18816164, ECO:0000269|PubMed:25378179}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00009 | PBM | Transfer from 929286 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00075987001 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by the miRNA miR-JAW/miR319 (PubMed:12931144, PubMed:18816164). {ECO:0000269|PubMed:12931144, ECO:0000269|PubMed:18816164}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC189530 | 0.0 | AC189530.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH001C24, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013587208.1 | 0.0 | PREDICTED: transcription factor TCP4-like | ||||
Refseq | XP_013696845.1 | 0.0 | transcription factor TCP4-like | ||||
Swissprot | Q8LPR5 | 0.0 | TCP4_ARATH; Transcription factor TCP4 | ||||
TrEMBL | A0A078JSH4 | 0.0 | A0A078JSH4_BRANA; BnaCnng59700D protein (Fragment) | ||||
STRING | Bo5g127500.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2408 | 27 | 71 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G15030.3 | 1e-173 | TCP family protein |