PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00075873001
Common NameGSBRNA2T00075873001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C2H2
Protein Properties Length: 491aa    MW: 53110.7 Da    PI: 6.5771
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00075873001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.30.00012184205223
                          EETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                           C++C++ F++  +L  H++tH
  GSBRNA2T00075873001 184 ICNICKRGFPNANSLGAHQKTH 205
                          6********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.889183210IPR007087Zinc finger, C2H2
PROSITE patternPS000280185207IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 491 aa     Download sequence    Send to blast
MSPSNSSSSP ETDQRLNDIV VAVQEKSTMT NPKQVSPREV VPEVNNPTQG SPQEVVPEVH  60
NPTQVSPQEI VPEVNNPKQV SPHPEVVPEV NNLKQASPQE VVHEMNNPKQ VSPEEVVSQV  120
NNPKQVSPQE VVPDPNNPKQ GLPQEVVPET ESKKTQRASF ELRVLRAINK LIKKYPSLDN  180
HSLICNICKR GFPNANSLGA HQKTHKHDLE LERKLKQAEP IYSPPGPGQC FWKKHDNSYQ  240
GTTSNALSND KHLGISRESI GGEGSSVRKM NIGEVMGYPS PPPYGNTNYG FSSGAPLVTH  300
NYNRPNLSDF NRSGLSFGPF KPNGGGNYPY PPFTMNPSYG SHDSKIMNSI SQPNTLGSCS  360
NNNNNNSSSQ GAISLELSLG PSKWMGGGNN NSSVYPSLNG GVTGGGSMDL NTPVRPLVSR  420
NHFYSNYPLD SFTSNVPPPP PPSPATSLSN DENVPGSSLI SKEKNKAMVV DDDEKDWETG  480
GHDADKPAQV *
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00075873001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009132652.10.0PREDICTED: uncharacterized protein LOC103857225
TrEMBLA0A078I1V20.0A0A078I1V2_BRANA; BnaA03g11900D protein
STRINGBra029029.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1875167
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G27880.13e-14C2H2 family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]