PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00075573001
Common NameGSBRNA2T00075573001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family NAC
Protein Properties Length: 326aa    MW: 37113 Da    PI: 8.2742
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00075573001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM176.95.7e-55161421129
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 
                          lppGfrFhPtdeel+++yL+kkv + ++++ +++ evd +k+ePw+Lp ++k +ekewyfF+ rdkky+tg r+nrat++gyWkatgkdk
  GSBRNA2T00075573001  16 LPPGFRFHPTDEELITQYLHKKVLDISFSA-KAVGEVDFNKSEPWELPWMAKMGEKEWYFFCVRDKKYPTGLRTNRATEAGYWKATGKDK 104
                          79**************************99.88***************8888899*********************************** PP

                  NAM  91 evlskkgelvglkktLvfykgrapkgektdWvmheyrle 129
                          e+++ +++lvg+kktLvfy+grapkg+kt+Wvmhe+rle
  GSBRNA2T00075573001 105 EIYQ-GKSLVGMKKTLVFYRGRAPKGQKTNWVMHEFRLE 142
                          ****.999****************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.88E-6213166IPR003441NAC domain
PROSITE profilePS5100558.50416166IPR003441NAC domain
PfamPF023651.2E-2817141IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    Send to blast
MESFCEFQKE EEQIDLPPGF RFHPTDEELI TQYLHKKVLD ISFSAKAVGE VDFNKSEPWE  60
LPWMAKMGEK EWYFFCVRDK KYPTGLRTNR ATEAGYWKAT GKDKEIYQGK SLVGMKKTLV  120
FYRGRAPKGQ KTNWVMHEFR LEGKLSAHNL PKTAKNEWVI CRVFQKTAGG KKIPISSIIR  180
IGSLGTGFNP SPLPYLTDNS SYNDKTKTEP VYVPCFSNQT DQAQGNTLNG FISPVLNSIQ  240
ADIFHRIPLY QSPMLAQERS VLQAMVDNNT RQSLKAMSVS QETAVSTDMN TDTSSDFEYG  300
KRRLSAQEDP YSSTGLVDLE PFWNY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A4e-541317214171NO APICAL MERISTEM PROTEIN
1ut4_B4e-541317214171NO APICAL MERISTEM PROTEIN
1ut7_A4e-541317214171NO APICAL MERISTEM PROTEIN
1ut7_B4e-541317214171NO APICAL MERISTEM PROTEIN
3swm_A4e-541317217174NAC domain-containing protein 19
3swm_B4e-541317217174NAC domain-containing protein 19
3swm_C4e-541317217174NAC domain-containing protein 19
3swm_D4e-541317217174NAC domain-containing protein 19
3swp_A4e-541317217174NAC domain-containing protein 19
3swp_B4e-541317217174NAC domain-containing protein 19
3swp_C4e-541317217174NAC domain-containing protein 19
3swp_D4e-541317217174NAC domain-containing protein 19
4dul_A4e-541317214171NAC domain-containing protein 19
4dul_B4e-541317214171NAC domain-containing protein 19
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.77191e-148flower| leaf| seed
Functional Description ? help Back to Top
Source Description
UniProtBinds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269|PubMed:27021284}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00075573001
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by the microRNA miR164. {ECO:0000269|PubMed:15294871, ECO:0000269|PubMed:17098808}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC9667450.0KC966745.1 Brassica napus NAC transcription factor 100 (NAC100.1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013678255.10.0NAC domain-containing protein 100-like
RefseqXP_013741166.10.0NAC domain-containing protein 100-like
SwissprotQ9FLJ20.0NC100_ARATH; NAC domain-containing protein 100
TrEMBLA0A078HWN70.0A0A078HWN7_BRANA; BnaAnng07000D protein
STRINGBra029313.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40028174
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61430.10.0NAC domain containing protein 100
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]