PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | GSBRNA2T00075260001 | ||||||||
Common Name | GSBRNA2T00075260001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
|
||||||||
Family | HSF | ||||||||
Protein Properties | Length: 272aa MW: 30055.4 Da PI: 6.0736 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 113.6 | 1.3e-35 | 12 | 102 | 2 | 101 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkk 91 Fl+k+y++++d++++ ++sw+e+g++fvv+++ efak++LpkyFkh+nf+SF+RQLn+YgF+k+ ++ weF++++F++g++ GSBRNA2T00075260001 12 FLSKTYQLVDDHSTDGVVSWNEDGTAFVVWETAEFAKDLLPKYFKHNNFSSFIRQLNTYGFRKTVPDK---------WEFANDHFRRGQE 92 9***************************************************************9999.........************* PP XXXXXXXXXX CS HSF_DNA-bind 92 ellekikrkk 101 +ll++i+r+k GSBRNA2T00075260001 93 DLLSEIRRRK 102 ********98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.10 | 8.3E-38 | 4 | 95 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 2.8E-59 | 8 | 101 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
SuperFamily | SSF46785 | 6.26E-34 | 9 | 101 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Pfam | PF00447 | 3.2E-32 | 12 | 101 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 2.5E-20 | 12 | 35 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 2.5E-20 | 50 | 62 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 2.5E-20 | 63 | 75 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 272 aa Download sequence Send to blast |
MTAAQRTVPA PFLSKTYQLV DDHSTDGVVS WNEDGTAFVV WETAEFAKDL LPKYFKHNNF 60 SSFIRQLNTY GFRKTVPDKW EFANDHFRRG QEDLLSEIRR RKAMIAAAAE SNSAGDDDST 120 SSPGSKNPGS VENMVADLSG ENKKLKREND SLSSELAAAK RQRDELVAFL TDQLKVGPEQ 180 IDQMVKGGKF KPNITGDCSS EEESDCEGCG GDGVEKEGVG EGLKLFGVWV KGERKKRGRD 240 EKNFVVGGSH RPDIKNVDFH APLWKSSKVC N* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5d5u_B | 3e-26 | 2 | 101 | 20 | 129 | Heat shock factor protein 1 |
5d5v_B | 3e-26 | 2 | 101 | 20 | 129 | Heat shock factor protein 1 |
5d5v_D | 3e-26 | 2 | 101 | 20 | 129 | Heat shock factor protein 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE). |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | GSBRNA2T00075260001 |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: By heat stress. {ECO:0000269|PubMed:9645433}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_013742532.1 | 0.0 | heat stress transcription factor B-1-like | ||||
Refseq | XP_013742534.1 | 0.0 | heat stress transcription factor B-1-like | ||||
Swissprot | Q96320 | 1e-140 | HSFB1_ARATH; Heat stress transcription factor B-1 | ||||
TrEMBL | A0A078HXX0 | 0.0 | A0A078HXX0_BRANA; BnaA03g53750D protein | ||||
TrEMBL | A0A397KW44 | 0.0 | A0A397KW44_BRACM; Uncharacterized protein | ||||
STRING | Bra017800.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6101 | 25 | 46 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G36990.1 | 1e-118 | heat shock factor 4 |