PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00075121001
Common NameGSBRNA2T00075121001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB_related
Protein Properties Length: 96aa    MW: 10901 Da    PI: 9.604
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00075121001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding285.2e-091257245
                         SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS
      Myb_DNA-binding  2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45
                         g+WT+   + + +a + +  +   +W+ +a+ +g g+t +++k ++ 
  GSBRNA2T00075121001 12 GSWTAKQNKAFEQALATYDQDtpnRWHNVAQVVG-GKTTEEVKRHYE 57
                         89*****************99*************.**********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129310.046964IPR017884SANT domain
SMARTSM007172.0E-81062IPR001005SANT/Myb domain
PfamPF002493.9E-71257IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.5E-51366IPR009057Homeodomain-like
SuperFamilySSF466896.65E-131367IPR009057Homeodomain-like
CDDcd001679.01E-71460No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 96 aa     Download sequence    Send to blast
MASSSVSSQS SGSWTAKQNK AFEQALATYD QDTPNRWHNV AQVVGGKTTE EVKRHYELLV  60
QDINSIETGH VPFPNYKTNG RQFQEEKRMR NMRLQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A4e-36695293RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00075121001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1895211e-119AC189521.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB091M07, complete sequence.
GenBankAC1896351e-119AC189635.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrS004J05, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013607272.13e-66PREDICTED: protein RADIALIS-like 1
SwissprotF4JVB81e-51RADL1_ARATH; Protein RADIALIS-like 1
TrEMBLA0A078HVY11e-65A0A078HVY1_BRANA; BnaC01g00270D protein
TrEMBLA0A3P6ERQ71e-65A0A3P6ERQ7_BRAOL; Uncharacterized protein
STRINGBo1g002450.12e-65(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22128198
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39250.12e-52RAD-like 1
Publications ? help Back to Top
  1. Zhang M, et al.
    ROOT HAIR DEFECTIVE3 family of dynamin-like GTPases mediates homotypic endoplasmic reticulum fusion and is essential for Arabidopsis development.
    Plant Physiol., 2013. 163(2): p. 713-20
    [PMID:23922269]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]