PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00075096001
Common NameGSBRNA2T00075096001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family BBR-BPC
Protein Properties Length: 283aa    MW: 31770.9 Da    PI: 9.878
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00075096001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind54.74.5e-17111081393
            GAGA_bind  13 yye...................paaslkenlglqlmssiaerdakirernlalsekkaavaerdmaflqrdkalaernkalverdnklla 83 
                          yy+                   ++++l   +++++ms++aerda+++er+ al++k++a+a+rd+a+ qrdkal+ r++a++erd++l a
  GSBRNA2T00075096001  11 YYKegthsvwntmpnhhqtkedQHNALV--MNQKIMSILAERDAALKERDDALAAKQEALAARDEALDQRDKALSLRDNAILERDSALSA 98 
                          6666666666666666666544556666..99********************************************************** PP

            GAGA_bind  84 lllvenslas 93 
                          l+++e++l+ 
  GSBRNA2T00075096001  99 LQFREHNLNY 108
                          ******9883 PP
2GAGA_bind249.52.1e-76136281153300
            GAGA_bind 153 rqrakkpkekkakkkkkksekskkkvkkesaderskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvy 242
                          ++r+kk k ++++k k+ +e+ +++v++++  ++ +++++s  ++ln v++De+t+PvP+C+CtG+ r CYkWGnGGWqS+CCttt+S y
  GSBRNA2T00075096001 136 SKRKKKRKPETRSKGKRVGEDLNHHVASPG--KKCRKDWDSNVVGLNLVTFDETTMPVPMCTCTGTARHCYKWGNGGWQSSCCTTTLSLY 223
                          344455555556678888899999999999..57******************************************************** PP

            GAGA_bind 243 PLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvti 300
                          PLP+++++r++R++grKmS+++f++lL++La++G+dls pvDLkd+WA+HGtn+++ti
  GSBRNA2T00075096001 224 PLPQMPNKRHSRVGGRKMSGNVFSRLLSRLAGQGHDLSSPVDLKDYWARHGTNRYITI 281
                          *********************************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012261.8E-1251282IPR010409GAGA-binding transcriptional activator
PfamPF062171.0E-8617281IPR010409GAGA-binding transcriptional activator
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    Send to blast
MESDGRYNPD YYKEGTHSVW NTMPNHHQTK EDQHNALVMN QKIMSILAER DAALKERDDA  60
LAAKQEALAA RDEALDQRDK ALSLRDNAIL ERDSALSALQ FREHNLNYIL SRAKLGSSHL  120
PNPSPLSTIP HEAAPSKRKK KRKPETRSKG KRVGEDLNHH VASPGKKCRK DWDSNVVGLN  180
LVTFDETTMP VPMCTCTGTA RHCYKWGNGG WQSSCCTTTL SLYPLPQMPN KRHSRVGGRK  240
MSGNVFSRLL SRLAGQGHDL SSPVDLKDYW ARHGTNRYIT IM*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1136142KRKKKRK
2138143KKKRKP
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, leaves and pistils. {ECO:0000269|PubMed:14731261}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269|PubMed:14731261}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00075096001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1895210.0AC189521.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB091M07, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013589721.10.0PREDICTED: protein BASIC PENTACYSTEINE5-like
RefseqXP_013589798.10.0PREDICTED: protein BASIC PENTACYSTEINE5-like
RefseqXP_013589871.10.0PREDICTED: protein BASIC PENTACYSTEINE5-like
SwissprotF4JUI31e-151BPC5_ARATH; Protein BASIC PENTACYSTEINE5
TrEMBLA0A078I0K60.0A0A078I0K6_BRANA; BnaC01g00050D protein
TrEMBLA0A3P6FIZ80.0A0A3P6FIZ8_BRAOL; Uncharacterized protein
STRINGBo1g002230.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40902659
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38910.21e-136basic pentacysteine 5
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]