PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00074919001
Common NameGSBRNA2T00074919001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MIKC_MADS
Protein Properties Length: 379aa    MW: 43271.7 Da    PI: 8.9581
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00074919001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF931.4e-29959151
                         S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
               SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                         krienk nrqvtfskR+ g+lKKA+ELSvLCd+eva+iifss+ klye+ss
  GSBRNA2T00074919001  9 KRIENKVNRQVTFSKRKGGLLKKAYELSVLCDVEVALIIFSSSSKLYEFSS 59
                         79***********************************************96 PP
2K-box76.28.8e-2679167794
                K-box   7 ksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkek.elqeenkaL 94 
                          ++  e+ +++++qe++kL++++e+L r++R llGedL+++s+keL+ Le+qLe +l+  R++K+++ +eq+e+l++k   +l ++nk++
  GSBRNA2T00074919001  79 NNRPEESTQRWSQEVTKLRSKYESLLRTHRYLLGEDLGEMSVKELETLERQLEGALSATRQRKTQVTMEQMEDLRRKASlQLGDINKKM 167
                          45678889*******************************************************************99752556666655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006631.595161IPR002100Transcription factor, MADS-box
SMARTSM004321.5E-36160IPR002100Transcription factor, MADS-box
CDDcd002652.40E-39278No hitNo description
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.11E-31388IPR002100Transcription factor, MADS-box
PRINTSPR004045.2E-30323IPR002100Transcription factor, MADS-box
PfamPF003196.7E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004045.2E-302338IPR002100Transcription factor, MADS-box
PRINTSPR004045.2E-303859IPR002100Transcription factor, MADS-box
PfamPF014861.3E-2383171IPR002487Transcription factor, K-box
PROSITE profilePS5129713.99486177IPR002487Transcription factor, K-box
PfamPF056486.0E-24233368IPR008733Peroxisomal biogenesis factor 11
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016559Biological Processperoxisome fission
GO:0005634Cellular Componentnucleus
GO:0005779Cellular Componentintegral component of peroxisomal membrane
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 379 aa     Download sequence    Send to blast
MARGRVEVKR IENKVNRQVT FSKRKGGLLK KAYELSVLCD VEVALIIFSS SSKLYEFSSD  60
AMEKTIERYS RCNNNILDNN RPEESTQRWS QEVTKLRSKY ESLLRTHRYL LGEDLGEMSV  120
KELETLERQL EGALSATRQR KTQVTMEQME DLRRKASLQL GDINKKMKLE VEGHEFKGFQ  180
DLLLNSDARA GSTDFSLFSS HHNSVDCDVG QFLKNGFQQQ YEQGDGLVLE SNSKNALLCT  240
YYFLDQFVWL GRSGIYKNKV LTELIRSFAI FCWLGSSLCN IAIQIGELIM HSSTMKKMEK  300
ELKDDEEQDK ETDRAKLQKT KDRILVLIKS SMDTVVAIGL LHLAPFIVTP RVTGAFGFVT  360
SLISCYQLLP GRRKLKTP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A5e-22178186MEF2 CHIMERA
6byy_B5e-22178186MEF2 CHIMERA
6byy_C5e-22178186MEF2 CHIMERA
6byy_D5e-22178186MEF2 CHIMERA
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.134040.0seed
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00074919001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013635151.11e-163PREDICTED: agamous-like MADS-box protein AGL13
RefseqXP_013691456.11e-163agamous-like MADS-box protein AGL13
SwissprotQ388371e-104AGL13_ARATH; Agamous-like MADS-box protein AGL13
TrEMBLA0A078HVG90.0A0A078HVG9_BRANA; BnaC04g21960D protein
TrEMBLA0A3P6CP160.0A0A3P6CP16_BRAOL; Uncharacterized protein
STRINGBra014454.1-P1e-142(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM43022654
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61120.11e-98AGAMOUS-like 13
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]