PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00074795001

Common Name

GSBRNA2T00074795001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

MYB_related

Protein Properties

Length: 310aa MW: 34280.7 Da PI: 9.6647

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00074795001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	39.8	1.1e-12	101	146	2	47
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++WT+eE+ ++ + k+ G+g+W+ I++ + ++Rt+ q+ s+ qky GSBRNA2T00074795001 101 NPWTEEEHRMFLVGLKRIGKGDWRGISKSFVTTRTPTQVASHAQKY 146 69*******************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	15.212	95	151	IPR017930	Myb domain
SuperFamily	SSF46689	4.56E-17	97	151	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.8E-16	98	149	IPR006447	Myb domain, plants
SMART	SM00717	1.2E-9	99	149	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	1.4E-10	99	145	IPR009057	Homeodomain-like
Pfam	PF00249	1.1E-10	101	146	IPR001005	SANT/Myb domain
CDD	cd00167	2.79E-8	102	147	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 310 aa Download sequence Send to blast
MATTAKTCSH CGNNGHNAPT CCLNSVNKGS VKLFGVDISS DPIKSPEVTA LRKSLSLGNL 60 DSLLDNGNGD LTAAVEDTGY YSDGQIHSKK RRSSHEKKKG NPWTEEEHRM FLVGLKRIGK 120 GDWRGISKSF VTTRTPTQVA SHAQKYFLRL NGNDKRKRRA SLFDISIEDQ KEKEKNFPDA 180 SSSKTSSKQL ITGSQEPVQV QTQTEISNRF QNLSMGYMPI YQNAPPYYNF SPFMFHPMYY 240 ANPEPIRYVH PSGIPVPRHV PISMPQPHLN EVSDMTKKDG LELAIGLPPP PPQTTGSTDL 300 TAHGTIHVK*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in somatic embryogenesis. Acts as positive regulator of BHLH109. {ECO:0000269\|PubMed:26973252}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00074795001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013678253.1	0.0	probable transcription factor At5g61620
Refseq	XP_022567557.1	0.0	probable transcription factor At5g61620
Swissprot	Q9FKF9	1e-165	M5162_ARATH; Probable transcription factor At5g61620
TrEMBL	A0A078JNX7	0.0	A0A078JNX7_BRANA; BnaCnng59200D protein
STRING	Bo2g161470.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6021	27	47

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G61620.1	1e-145	MYB_related family protein

Link Out ? help Back to Top
Entrez Gene	106382743

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293] Nowak K,Gaj MD Stress-related function of bHLH109 in somatic embryo induction in Arabidopsis. J. Plant Physiol., 2016. 193: p. 119-26 [PMID:26973252]