PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00074719001
Common NameGSBRNA2T00074719001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family Nin-like
Protein Properties Length: 248aa    MW: 28511.1 Da    PI: 5.0776
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00074719001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK781.1e-24117167252
               RWP-RK   2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 
                          +k +s+e++s yF++pi++AA eL+v+lT+LKr+CR++G  RWPhRk+ sl
  GSBRNA2T00074719001 117 SKALSMETISLYFYMPITQAATELNVGLTLLKRRCRELGFTRWPHRKLMSL 167
                          5899********************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151916.55295189IPR003035RWP-RK domain
PfamPF020426.3E-20120167IPR003035RWP-RK domain
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    Send to blast
MADHTLNEEN PFSVPTHSLS FDNHSLLMDP SFEWEEEHLF MNNSVYEAFP LPTPLPDLEP  60
LSQDVLESYS SASWNVTDQN SGQGDLEQNT EQEAVQETTN KRKINRYVTT YTTFSTSKAL  120
SMETISLYFY MPITQAATEL NVGLTLLKRR CRELGFTRWP HRKLMSLLAL ISNVKEFEGG  180
ENAEKLKNAL LEMLENQKKR IEENPDLEFD DKTKRLRQAC FKATHKMKKK ASLKSDDHLC  240
GFTNEFN*
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00074719001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013726466.10.0protein RKD2-like
SwissprotQ9CA661e-90RKD2_ARATH; Protein RKD2
TrEMBLA0A078HX630.0A0A078HX63_BRANA; BnaC02g22910D protein
STRINGBra008153.1-P1e-171(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM39662356
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G74480.12e-82RWP-RK domain-containing protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  2. Tedeschi F,Rizzo P,Rutten T,Altschmied L,Bäumlein H
    RWP-RK domain-containing transcription factors control cell differentiation during female gametophyte development in Arabidopsis.
    New Phytol., 2017. 213(4): p. 1909-1924
    [PMID:27870062]