PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00074606001

Common Name

GSBRNA2T00074606001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

LBD

Protein Properties

Length: 248aa MW: 26714.5 Da PI: 8.1217

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00074606001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	96.2	3.4e-30	4	106	1	98
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqq 85 +C++C+vlr++C+++C ++p++ +++q++++ +++k++G++ +++ll++ p++ r+++++sl+yeA+ r+ +P+yG+vg+++++++ GSBRNA2T00074606001 4 SCNGCRVLRKGCSENCSIRPCLqwiksAESQANATVFLAKFYGRAGLMNLLSTGPDHLRPAIFRSLLYEACGRIVNPIYGSVGILWSGNW 93 6*******************9999777889****************************************************** PP DUF260 86 qleqlkaelallk 98 +l+q+++e+++++ GSBRNA2T00074606001 94 HLCQAAVEAVMRG 106 *****998766 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	16.945	3	109	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	8.4E-25	4	104	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 248 aa Download sequence Send to blast
MRMSCNGCRV LRKGCSENCS IRPCLQWIKS AESQANATVF LAKFYGRAGL MNLLSTGPDH 60 LRPAIFRSLL YEACGRIVNP IYGSVGILWS GNWHLCQAAV EAVMRGSPVT PIACDAAVTG 120 QAPPFNNNKL FDIRHVSRDE NAVKSRCRSS RSGACKEGRN VRSSLSHESS LSHESAVVKG 180 EGSMVSSEET TEEPSWIGLE LTLGLEPSGA RGSHVVVPIK KRKLEKSGTC DDDADTCKIE 240 LGLVCSE*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Bna.11732	0.0	seed

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in roots and flowers. {ECO:0000269\|PubMed:12068116}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00074606001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB473870	1e-135	AB473870.1 Arabidopsis thaliana ASL37 mRNA for ASYMMETRIC LEAVES2-like 37 protein, complete cds.
GenBank	AK229650	1e-135	AK229650.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL19-73-A22.
GenBank	BT010943	1e-135	BT010943.1 Arabidopsis thaliana At1g67100 gene, complete cds.
GenBank	BT011650	1e-135	BT011650.1 Arabidopsis thaliana At1g67100 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013619182.1	0.0	PREDICTED: LOB domain-containing protein 40
Refseq	XP_013676373.2	0.0	LOB domain-containing protein 40-like
Swissprot	Q9ZW96	1e-126	LBD40_ARATH; LOB domain-containing protein 40
TrEMBL	A0A078HWZ5	0.0	A0A078HWZ5_BRANA; BnaC02g17190D protein
TrEMBL	A0A0D3ANI6	0.0	A0A0D3ANI6_BRAOL; Uncharacterized protein
STRING	Bo2g055410.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM15248	15	18

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G67100.1	1e-127	LOB domain-containing protein 40

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]