PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00074541001
Common NameGSBRNA2T00074541001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family HD-ZIP
Protein Properties Length: 691aa    MW: 78081.4 Da    PI: 5.9714
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00074541001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox55.88e-182979656
                         S--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
             Homeobox  6 tftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                         +++++q++ Le++F+++++p++++r++  ++l+L+ +qVk+WFqN+R++ k
  GSBRNA2T00074541001 29 RHSPQQIQMLEAYFKECPHPNESQRQKFCNELNLEIDQVKFWFQNKRTQSK 79
                         689*********************************************988 PP
2START101.51.4e-322164356206
                          HHHHHHHHHHHC-TT-EEEE...EXCCTTEEEEEEESSS.......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEE CS
                START   6 aaqelvkkalaeepgWvkss...esengdevlqkfeeskv......dsgealrasgvvdmvlallveellddkeqWdetla....kaetl 82 
                          a +el ++ l +e++Wv ss   +  + +e++ kf+ s         ++e +++++vv+ +++ l   +ld   +W+  ++    ka+t+
  GSBRNA2T00074541001 216 AVEELKQLFLTDEALWVMSSidgTYVIDQESYEKFSHSIKhfrnlsARVESSKDVTVVPIEATSLIDMFLDLE-KWKMLFPtivnKAKTI 304
                          56788899999*********988777788888888776668899999****************7777777766.99999988899***** PP

                          EEECTT.......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--..-TTSEE-EESSEEEEEEEECTCEEE CS
                START  83 evissg.......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe.sssvvRaellpSgiliepksnghsk 163
                           ++ s        ++lq +  +l  lsplvp R+f++vR+++q g+  w+i+dvS    ++ ++ s+s+ +   +pSg+li++++n h++
  GSBRNA2T00074541001 305 HTLGSElpikencNVLQMIWEQLHILSPLVPpREFMIVRCCQQIGERLWIIADVSQHIVNSDQSiSPSCYK---RPSGCLIRSLPNAHTE 391
                          *****************************************************998777776655677666...**************** PP

                          EEEEE-EE--SSXX.HHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
                START 164 vtwvehvdlkgrlp.hwllrslvksglaegaktwvatlqrqcek 206
                          v w+ehv+++     h ++r lv+ g   ga++w  tl+r ce+
  GSBRNA2T00074541001 392 VRWIEHVEVDHTADtHRMYRELVSGGSGYGARRWIVTLERMCER 435
                          **********99988***************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.5E-17679IPR009057Homeodomain-like
SuperFamilySSF466891.63E-161181IPR009057Homeodomain-like
SMARTSM003892.7E-132185IPR001356Homeobox domain
PROSITE profilePS5007115.6292181IPR001356Homeobox domain
CDDcd000865.86E-142881No hitNo description
PfamPF000462.4E-152979IPR001356Homeobox domain
PROSITE profilePS5084835.409202438IPR002913START domain
SuperFamilySSF559611.79E-23204436No hitNo description
CDDcd088751.33E-82207434No hitNo description
SMARTSM002341.6E-16211435IPR002913START domain
PfamPF018523.5E-26216435IPR002913START domain
Gene3DG3DSA:3.30.530.207.1E-4218401IPR023393START-like domain
SuperFamilySSF559611.06E-7457650No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 691 aa     Download sequence    Send to blast
MDYDGDGSQD NQHYTSVNAM SKEKRICHRH SPQQIQMLEA YFKECPHPNE SQRQKFCNEL  60
NLEIDQVKFW FQNKRTQSKA QDERTSNILL RAENEKLQCE NAAMLEALKN VTCPPCGGPP  120
FGREEREPNL HKLRLENPLF KAESDSLAAA KNKYQQTMLD SLTSVQRQQT FEALTSYGMN  180
PYNPFEQPSP SESQTIQPQL LPQMDIPQLS ETAAIAVEEL KQLFLTDEAL WVMSSIDGTY  240
VIDQESYEKF SHSIKHFRNL SARVESSKDV TVVPIEATSL IDMFLDLEKW KMLFPTIVNK  300
AKTIHTLGSE LPIKENCNVL QMIWEQLHIL SPLVPPREFM IVRCCQQIGE RLWIIADVSQ  360
HIVNSDQSIS PSCYKRPSGC LIRSLPNAHT EVRWIEHVEV DHTADTHRMY RELVSGGSGY  420
GARRWIVTLE RMCERMALST ILIMPATDWS ETIPTVEGRK SVMKLGERMV KIFNEMLIMS  480
GKVEFPQQSK CGVRISIRMN MEPGQLPGLV VSAASCLSIP LTPLQVFNSL RSNDTRHQWD  540
VLCHGNAITE TARISTGSSG TNYINLLQPT PPWDIGQNMV QEPHKKMMVL QECYMDALGG  600
MIVYSPLDMA TMSIAASGEV DPLNIPILPS GFTISSDNNR GTVLMLAFQI LISDENSKTR  660
NVSENAADRV SRLISQTVQS IKVMLNCPPE *
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in the embryo at early stage and in the endosperm. {ECO:0000269|PubMed:16778018}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00074541001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013619678.10.0PREDICTED: homeobox-leucine zipper protein HDG8-like
SwissprotQ9M9P40.0HDG8_ARATH; Homeobox-leucine zipper protein HDG8
TrEMBLA0A078HX260.0A0A078HX26_BRANA; BnaC02g09070D protein
STRINGBo2g018400.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM127911530
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03260.10.0homeodomain GLABROUS 8
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]